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234,440 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Stoll, V."

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Search Summary

This query matches 9 Structures.

Refinements

Structure Determination Methodology

experimental (9)

Scientific Name of Source Organism

	Rattus norvegicus (3)
	Gallus gallus (2)
	Homo sapiens (2)
	Human immunodeficiency virus 1 (2)
	Influenza A virus (2)
	Sus scrofa (2)

Taxonomy

	Eukaryota (5)
	Riboviria (4)

Experimental Method

	X-RAY DIFFRACTION (8)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

Protein (9)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (2)
	2.5 - 3.0 (5)
	3.0 - 3.5 (1)

Release Date

	2000 - 2004 (2)
	2005 - 2009 (3)
	2020 - 2024 (4)

Enzyme Classification Name

	Hydrolases (6)
	Transferases (1)

Symmetry Type

	Cyclic (6)
	Asymmetric (4)

SCOP Classification

	All beta proteins (4)
	Alpha and beta proteins (a+b) (1)
	Alpha and beta proteins (a/b) (1)
	All alpha proteins (2)
	Artifacts (1)

AllSelected

1 to 9 of 9 Structures

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1MUI \| pdb_00001mui	Download File View File

Crystal structure of HIV-1 protease complexed with Lopinavir.

Stoll, V., Qin, W., Stewart, K.D., Jakob, C., Park, C., Walter, K., Simmer, R.L., Helfrich, R., Bussiere, D., Kao, J., Kempf, D., Sham, H.L., Norbeck, D.W.

(2002) Bioorg Med Chem 10: 2803-2806

Released	2002-10-23
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	protease (protein)
Unique Ligands	AB1

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1NI1 \| pdb_00001ni1	Download File View File

Imidazole and cyanophenyl farnesyl transferase inhibitors

Tong, Y., Lin, N.H., Wang, L., Hasvold, L., Wang, W., Leonard, N., Li, T., Li, Q., Cohen, J., Gu, W.Z., Zhang, H., Stoll, V., Bauch, J., Marsh, K., Rosenberg, S.H., Sham, H.L.

(2003) Bioorg Med Chem Lett 13: 1571-1574

Released	2004-04-06
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Rattus norvegicus
Macromolecule	Protein farnesyltransferase alpha subunit (protein) Protein farnesyltransferase beta subunit (protein)
Unique Ligands	2C5, HFP, ZN

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1XOE \| pdb_00001xoe	Download File View File

N9 Tern influenza neuraminidase complexed with (2R,4R,5R)-5-(1-Acetylamino-3-methyl-butyl-pyrrolidine-2, 4-dicarobyxylic acid 4-methyl esterdase complexed with

Wang, G.T., Wang, S., Gentles, R., Sowin, T., Maring, C.J., Kempf, D.J., Kati, W.M., Stoll, V., Stewart, K.D., Laver, G.

(2005) Bioorg Med Chem Lett 15: 125-128

Released	2005-01-11
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Influenza A virus
Macromolecule	Neuraminidase (protein)
Unique Ligands	ABX, MAN, NAG
Unique branched monosaccharides	BMA, MAN, NAG

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1XOG \| pdb_00001xog	Download File View File

N9 Tern Influenza neuraminidase complexed with a 2,5-Disubstituted tetrahydrofuran-5-carboxylic acid

Wang, G.T., Wang, S., Gentles, R., Sowin, T., Maring, C.J., Kempf, D.J., Kati, W.M., Stoll, V., Stewart, K.D., Laver, G.

(2005) Bioorg Med Chem Lett 15: 125-128

Released	2005-01-11
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Influenza A virus
Macromolecule	Neuraminidase (protein)
Unique Ligands	ABW, MAN, NAG
Unique branched monosaccharides	BMA, MAN, NAG

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2A4F \| pdb_00002a4f	Download File View File

Synthesis and Activity of N-Axyl Azacyclic Urea HIV-1 Protease Inhibitors with High Potency Against Multiple Drug Resistant Viral Strains.

Zhao, C., Sham, H., Sun, M., Lin, S., Stoll, V., Stewart, K.D., Mo, H., Vasavanonda, S., Saldivar, A., McDonald, E.

(2005) Bioorg Med Chem Lett 15: 5499-5503

Released	2005-09-20
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Pol polyprotein (protein)
Unique Ligands	AAU

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6Y4M \| pdb_00006y4m	Download File View File

Structure of Tubulin Tyrosine Ligase in Complex with Tb111

Gavrilyuk, J., Nocek, B., Rigol, S., Nicolaou, K.C., Stoll, V.

(2021) J Org Chem 86: 3377-3421

Released	2021-03-31
Method	X-RAY DIFFRACTION 3.34 Å
Organisms	Gallus gallus Rattus norvegicus Sus scrofa
Macromolecule	Stathmin-4 (protein) Tubulin alpha-1B chain (protein) Tubulin beta chain (protein) Tubulin-Tyrosine Ligase (protein)
Unique Ligands	ACP, CA, GDP, GTP, MES, MG, O9B, O9H, OH5, PGE, VAL

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6Y4N \| pdb_00006y4n	Download File View File

Structure of Tubulin Tyrosine Ligase in Complex with Tb116

Gavrilyuk, J., Nocek, B., Rigol, S., Nicolaou, K.C., Stoll, V.

(2021) J Org Chem 86: 3377-3421

Released	2021-03-31
Method	X-RAY DIFFRACTION 2.852 Å
Organisms	Gallus gallus Rattus norvegicus Sus scrofa
Macromolecule	Stathmin-4 (protein) Tubulin alpha-1B chain (protein) Tubulin beta chain (protein) Tubulin-Tyrosine Ligase (protein)
Unique Ligands	ACP, CA, GDP, GTP, MES, MG, O9B, O9K, O9N, P6S, PEG, PGE, VAL

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7KMA \| pdb_00007kma	Download File View File

Crystal structure of eif2Balpha with a ligand.

Nocek, B., Hao, Q., Remarcik, C., Stoll, V., Wong, Y., Sidrauski, C.

(2021) Nat Commun 12: 3440-3440

Released	2021-07-21
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Translation initiation factor eIF-2B subunit alpha (protein)
Unique Ligands	ACT, M6P

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7KMF \| pdb_00007kmf	Download File View File

Sugar phosphate activation of the stress sensor eIF2B

Nocek, B., Hao, Q., Wong, Y., Stoll, V., Sidrauski, C.

(2021) Nat Commun 12: 3440-3440

Released	2021-07-14
Method	ELECTRON MICROSCOPY 2.91 Å
Organisms	Homo sapiens
Macromolecule	Translation initiation factor eIF-2B subunit alpha (protein) Translation initiation factor eIF-2B subunit beta (protein) Translation initiation factor eIF-2B subunit delta (protein) Translation initiation factor eIF-2B subunit epsilon (protein) Translation initiation factor eIF-2B subunit gamma (protein)
Unique Ligands	F6P

1 to 9 of 9 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1MUI | pdb_00001mui

Crystal structure of HIV-1 protease complexed with Lopinavir.

1NI1 | pdb_00001ni1

Imidazole and cyanophenyl farnesyl transferase inhibitors

1XOE | pdb_00001xoe

N9 Tern influenza neuraminidase complexed with (2R,4R,5R)-5-(1-Acetylamino-3-methyl-butyl-pyrrolidine-2, 4-dicarobyxylic acid 4-methyl esterdase complexed with

1XOG | pdb_00001xog

N9 Tern Influenza neuraminidase complexed with a 2,5-Disubstituted tetrahydrofuran-5-carboxylic acid

2A4F | pdb_00002a4f

Synthesis and Activity of N-Axyl Azacyclic Urea HIV-1 Protease Inhibitors with High Potency Against Multiple Drug Resistant Viral Strains.

6Y4M | pdb_00006y4m

Structure of Tubulin Tyrosine Ligase in Complex with Tb111

6Y4N | pdb_00006y4n

Structure of Tubulin Tyrosine Ligase in Complex with Tb116

7KMA | pdb_00007kma

Crystal structure of eif2Balpha with a ligand.

7KMF | pdb_00007kmf

Sugar phosphate activation of the stress sensor eIF2B

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1MUI | pdb_00001mui

1NI1 | pdb_00001ni1

1XOE | pdb_00001xoe

1XOG | pdb_00001xog

2A4F | pdb_00002a4f

6Y4M | pdb_00006y4m

6Y4N | pdb_00006y4n

7KMA | pdb_00007kma

7KMF | pdb_00007kmf