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234,440 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Somalinga, V."

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Search Summary

This query matches 14 Structures.

Refinements

Structure Determination Methodology

experimental (14)

Scientific Name of Source Organism

	Sulfolobus acidocaldarius (5)
	Pyrococcus furiosus DSM 3638 (3)
	Escherichia coli K-12 (2)
	Bacillus subtilis (1)
	Bacillus subtilis subsp. subtilis str. 168 (1)
	Pyrococcus furiosus (1)
	Thermus thermophilus HB27 (1)

Taxonomy

	Archaea (9)
	Bacteria (5)

Experimental Method

X-RAY DIFFRACTION (14)

Polymer Entity Type

Protein (14)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (4)
	2.0 - 2.5 (6)
	2.5 - 3.0 (2)

Release Date

	1995 - 1999 (1)
	2010 - 2014 (8)
	2015 - 2019 (4)
	2020 - 2024 (1)

Enzyme Classification Name

Transferases (14)

Symmetry Type

	Asymmetric (8)
	Cyclic (6)
	Tetrahedral (1)

SCOP Classification

Alpha and beta proteins (a/b) (1)

AllSelected

1 to 14 of 14 Structures

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1A1S \| pdb_00001a1s	Download File View File

ORNITHINE CARBAMOYLTRANSFERASE FROM PYROCOCCUS FURIOSUS

Villeret, V., Clantin, B., Tricot, C., Legrain, C., Roovers, M., Stalon, V., Glansdorff, N., Van Beeumen, J.

(1998) Proc Natl Acad Sci U S A 95: 2801-2806

Released	1998-06-17
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Pyrococcus furiosus
Macromolecule	ORNITHINE CARBAMOYLTRANSFERASE (protein)

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3TLJ \| pdb_00003tlj	Download File View File

Crystal structure of Trm14 from Pyrococcus furiosus in complex with S-adenosyl-L-homocysteine

Fislage, M., Roovers, M., Tuszynska, I., Bujnicki, J.M., Droogmans, L., Versees, W.

(2012) Nucleic Acids Res 40: 5149-5161

Released	2012-03-14
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Pyrococcus furiosus DSM 3638
Macromolecule	tRNA (guanine N2-)-methyltransferase Trm14 (protein)
Unique Ligands	ACT, SAH

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3TM4 \| pdb_00003tm4	Download File View File

Crystal structure of Trm14 from Pyrococcus furiosus in complex with S-adenosylmethionine

Fislage, M., Roovers, M., Tuszynska, I., Bujnicki, J.M., Droogmans, L., Versees, W.

(2012) Nucleic Acids Res 40: 5149-5161

Released	2012-03-14
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Pyrococcus furiosus DSM 3638
Macromolecule	tRNA (guanine N2-)-methyltransferase Trm14 (protein)
Unique Ligands	SAM

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3TM5 \| pdb_00003tm5	Download File View File

Crystal structure of Trm14 from Pyrococcus furiosus in complex with sinefungin

Fislage, M., Roovers, M., Tuszynska, I., Bujnicki, J.M., Droogmans, L., Versees, W.

(2012) Nucleic Acids Res 40: 5149-5161

Released	2012-03-14
Method	X-RAY DIFFRACTION 2.27 Å
Organisms	Pyrococcus furiosus DSM 3638
Macromolecule	Crystal structure of Trm14 (protein)
Unique Ligands	SFG

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3TMA \| pdb_00003tma	Download File View File

Crystal structure of TrmN from Thermus thermophilus

Fislage, M., Roovers, M., Tuszynska, I., Bujnicki, J.M., Droogmans, L., Versees, W.

(2012) Nucleic Acids Res 40: 5149-5161

Released	2012-03-14
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Thermus thermophilus HB27
Macromolecule	methyltransferase (protein)
Unique Ligands	PO4

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4CND \| pdb_00004cnd	Download File View File

Crystal structure of E.coli TrmJ

Van Laer, B., Somme, J., Roovers, M., Steyaert, J., Droogmans, L., Versees, W.

(2014) RNA 20: 1257

Released	2014-07-02
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Escherichia coli K-12
Macromolecule	TRNA (CYTIDINE/URIDINE-2'-O-)-METHYLTRANSFERASE TRMJ (protein)
Unique Ligands	PEG

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4CNE \| pdb_00004cne	Download File View File

Crystal structure of E.coli TrmJ in complex with S-adenosyl-L- homocysteine

Van Laer, B., Somme, J., Roovers, M., Steyaert, J., Droogmans, L., Versees, W.

(2014) RNA 20: 1257

Released	2014-07-02
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli K-12
Macromolecule	TRNA (CYTIDINE/URIDINE-2'-O-)-METHYLTRANSFERASE TRMJ (protein)
Unique Ligands	PEG, SAH

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4CNF \| pdb_00004cnf	Download File View File

Crystal structure of Sulfolobus acidocaldarius TrmJ

Van Laer, B., Somme, J., Roovers, M., Steyaert, J., Droogmans, L., Versees, W.

(2014) RNA 20: 1257

Released	2014-07-02
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Sulfolobus acidocaldarius
Macromolecule	SPOU RRNA METHYLASE (protein)
Unique Ligands	GOL, MTA, PEG

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4CNG \| pdb_00004cng	Download File View File

Crystal structure of Sulfolobus acidocaldarius TrmJ in complex with S-adenosyl-L-Homocysteine

Van Laer, B., Somme, J., Roovers, M., Steyaert, J., Droogmans, L., Versees, W.

(2014) RNA 20: 1257

Released	2014-07-02
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Sulfolobus acidocaldarius
Macromolecule	SPOU RRNA METHYLASE (protein)
Unique Ligands	GOL, SAH

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5A7T \| pdb_00005a7t	Download File View File

Crystal structure of Sulfolobus acidocaldarius Trm10 at 2.4 angstrom resolution.

Van Laer, B., Roovers, M., Wauters, L., Kasprzak, J., Dyzma, M., Deyaert, E., Feller, A., Bujnicki, J., Droogmans, L., Versees, W.

(2016) Nucleic Acids Res 44: 940

Released	2016-01-13
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Sulfolobus acidocaldarius
Macromolecule	TRNA (ADENINE(9)-N1)-METHYLTRANSFERASE (protein)
Unique Ligands	PEG

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5A7Y \| pdb_00005a7y	Download File View File

Crystal structure of Sulfolobus acidocaldarius Trm10 in complex with S-adenosylhomocysteine

Van Laer, B., Roovers, M., Wauters, L., Kasprzak, J., Dyzma, M., Deyaert, E., Feller, A., Bujnicki, J., Droogmans, L., Versees, W.

(2016) Nucleic Acids Res 44: 940

Released	2016-01-13
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Sulfolobus acidocaldarius
Macromolecule	TRNA (ADENINE(9)-N1)-METHYLTRANSFERASE (protein)
Unique Ligands	ACT, PEG, SAH

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5A7Z \| pdb_00005a7z	Download File View File

Crystal structure of Sulfolobus acidocaldarius Trm10 at 2.1 angstrom resolution.

Van Laer, B., Roovers, M., Wauters, L., Kasprzak, J., Dyzma, M., Deyaert, E., Feller, A., Bujnicki, J., Droogmans, L., Versees, W.

(2016) Nucleic Acids Res 44: 940

Released	2016-01-13
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Sulfolobus acidocaldarius
Macromolecule	TRNA (ADENINE(9)-N1)-METHYLTRANSFERASE (protein)

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6Q56 \| pdb_00006q56	Download File View File

Crystal structure of the B. subtilis M1A22 tRNA methyltransferase TrmK

Degut, C., Roovers, M., Barraud, P., Brachet, F., Feller, A., Larue, V., Al Refaii, A., Caillet, J., Droogmans, L., Tisne, C.

(2019) Nucleic Acids Res 47: 4736-4750

Released	2019-03-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	tRNA (adenine(22)-N(1))-methyltransferase (protein)
Unique Ligands	NI

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7QIU \| pdb_00007qiu	Download File View File

YsgA 23s RNA methyltransferase from Bacillus subtilis

Labar, G., Van Elder, D., Roovers, M., Droogmans, L.

(2022) RNA 28: 1185-1196

Released	2022-12-28
Method	X-RAY DIFFRACTION 1.877 Å
Organisms	Bacillus subtilis
Macromolecule	rRNA methylase (protein)

1 to 14 of 14 Structures

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1A1S | pdb_00001a1s

ORNITHINE CARBAMOYLTRANSFERASE FROM PYROCOCCUS FURIOSUS

3TLJ | pdb_00003tlj

Crystal structure of Trm14 from Pyrococcus furiosus in complex with S-adenosyl-L-homocysteine

3TM4 | pdb_00003tm4

Crystal structure of Trm14 from Pyrococcus furiosus in complex with S-adenosylmethionine

3TM5 | pdb_00003tm5

Crystal structure of Trm14 from Pyrococcus furiosus in complex with sinefungin

3TMA | pdb_00003tma

Crystal structure of TrmN from Thermus thermophilus

4CND | pdb_00004cnd

Crystal structure of E.coli TrmJ

4CNE | pdb_00004cne

Crystal structure of E.coli TrmJ in complex with S-adenosyl-L- homocysteine

4CNF | pdb_00004cnf

Crystal structure of Sulfolobus acidocaldarius TrmJ

4CNG | pdb_00004cng

Crystal structure of Sulfolobus acidocaldarius TrmJ in complex with S-adenosyl-L-Homocysteine

5A7T | pdb_00005a7t

Crystal structure of Sulfolobus acidocaldarius Trm10 at 2.4 angstrom resolution.

5A7Y | pdb_00005a7y

Crystal structure of Sulfolobus acidocaldarius Trm10 in complex with S-adenosylhomocysteine

5A7Z | pdb_00005a7z

Crystal structure of Sulfolobus acidocaldarius Trm10 at 2.1 angstrom resolution.

6Q56 | pdb_00006q56

Crystal structure of the B. subtilis M1A22 tRNA methyltransferase TrmK

7QIU | pdb_00007qiu

YsgA 23s RNA methyltransferase from Bacillus subtilis

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1A1S | pdb_00001a1s

3TLJ | pdb_00003tlj

3TM4 | pdb_00003tm4

3TM5 | pdb_00003tm5

3TMA | pdb_00003tma

4CND | pdb_00004cnd

4CNE | pdb_00004cne

4CNF | pdb_00004cnf

4CNG | pdb_00004cng

5A7T | pdb_00005a7t

5A7Y | pdb_00005a7y

5A7Z | pdb_00005a7z

6Q56 | pdb_00006q56

7QIU | pdb_00007qiu