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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Sohn, J."

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Search Summary

This query matches 59 Structures.

Refinements

Structure Determination Methodology

experimental (59)

Scientific Name of Source Organism

	Mus musculus (30)
	synthetic construct (21)
	Escherichia coli K-12 (16)
	Homo sapiens (11)
	DNA molecule (6)
	Escherichia coli (2)
	Vaccinia virus (1)

Taxonomy

	Eukaryota (41)
	other sequences (21)
	Bacteria (18)
	unclassified sequences (6)
	Varidnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (57)
	ELECTRON MICROSCOPY (2)

Polymer Entity Type

	Protein (59)
	DNA (27)

Refinement Resolution (Å)

	1.5 - 2.0 (8)
	2.0 - 2.5 (17)
	2.5 - 3.0 (30)
	3.0 - 3.5 (4)

Release Date

	2005 - 2009 (16)
	2010 - 2014 (8)
	2015 - 2019 (1)
	2020 - 2024 (34)

Enzyme Classification Name

	Hydrolases (24)
	Transferases (33)

Symmetry Type

	Cyclic (44)
	Asymmetric (13)
	Helical (2)

SCOP Classification

	All beta proteins (13)
	Alpha and beta proteins (a/b) (6)
	Artifacts (5)

AllSelected

1 to 25 of 59 Structures

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1YM9 \| pdb_00001ym9	Download File View File

Crystal structure of the CDC25B phosphatase catalytic domain with the active site cysteine in the sulfinic form

Buhrman, G.K., Parker, B., Sohn, J., Rudolph, J., Mattos, C.

(2005) Biochemistry 44: 5307-5316

Released	2005-04-12
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	M-phase inducer phosphatase 2 (protein)
Unique Ligands	CL

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1YMD \| pdb_00001ymd	Download File View File

Crystal Structure of the CDC25B phosphatase catalytic domain with the active site cysteine in the sulfonic form

Buhrman, G.K., Parker, B., Sohn, J., Rudolph, J., Mattos, C.

(2005) Biochemistry 44: 5307-5316

Released	2005-04-12
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	M-phase inducer phosphatase 2 (protein)
Unique Ligands	CL

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1YMK \| pdb_00001ymk	Download File View File

Crystal Structure of the CDC25B phosphatase catalytic domain in the apo form

Buhrman, G.K., Parker, B., Sohn, J., Rudolph, J., Mattos, C.

(2005) Biochemistry 44: 5307-5316

Released	2005-04-12
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	M-phase inducer phosphatase 2 (protein)
Unique Ligands	CL

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1YML \| pdb_00001yml	Download File View File

Crystal Structure of the CDC25B phosphatase catalytic domain with the active site cysteine in the sulfenic form

Buhrman, G.K., Parker, B., Sohn, J., Rudolph, J., Mattos, C.

(2005) Biochemistry 44: 5307-5316

Released	2005-04-12
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	M-phase inducer phosphatase 2 (protein)
Unique Ligands	CL

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1YS0 \| pdb_00001ys0	Download File View File

Crystal Structure of the CDC25B phosphatase catalytic domain with the active site cysteine in the disulfide form

Buhrman, G.K., Parker, B., Sohn, J., Rudolph, J., Mattos, C.

(2005) Biochemistry 44: 5307-5316

Released	2005-04-12
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	M-phase inducer phosphatase 2 (protein)
Unique Ligands	CL

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2A2K \| pdb_00002a2k	Download File View File

Crystal Structure of an active site mutant, C473S, of Cdc25B Phosphatase Catalytic Domain

Sohn, J., Parks, J., Buhrman, G., Brown, P., Kristjansdottir, K., Safi, A., Yang, W., Edelsbrunner, H., Rudolph, J.

(2005) Biochemistry 44: 16563-16573

Released	2006-01-03
Method	X-RAY DIFFRACTION 1.52 Å
Organisms	Homo sapiens
Macromolecule	M-phase inducer phosphatase 2 (protein)
Unique Ligands	CL, SO4

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2QF0 \| pdb_00002qf0	Download File View File

Structure of the delta PDZ truncation of the DegS protease

Sohn, J., Grant, R.A., Sauer, R.T.

(2007) Cell 131: 572-583

Released	2007-12-11
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli K-12
Macromolecule	Protease degS (protein)

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2QF3 \| pdb_00002qf3	Download File View File

Structure of the delta PDZ truncation of the DegS protease

Sohn, J., Grant, R.A., Sauer, R.T.

(2007) Cell 131: 572-583

Released	2007-12-11
Method	X-RAY DIFFRACTION 2.04 Å
Organisms	Escherichia coli K-12
Macromolecule	Protease degS (protein)
Unique Ligands	PO4

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2QGR \| pdb_00002qgr	Download File View File

Structure of the R178A mutant of delta PDZ DegS protease

Sohn, J., Grant, R.A., Sauer, R.T.

(2007) Cell 131: 572-583

Released	2007-12-11
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli K-12
Macromolecule	Protease degS (protein)

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2RCE \| pdb_00002rce	Download File View File

DFP modified DegS delta PDZ

Sohn, J., Grant, R.A., Sauer, R.T.

To be published

Released	2007-12-11
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Escherichia coli
Macromolecule	Protease degS (protein)

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3B8J \| pdb_00003b8j	Download File View File

Q191A mutant of DegS-deltaPDZ

Grant, R.A., Sohn, J., Sauer, R.T.

To be published

Released	2008-09-16
Method	X-RAY DIFFRACTION 2.507 Å
Organisms	Escherichia coli
Macromolecule	Protease degS (protein)

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3GCN \| pdb_00003gcn	Download File View File

Crystal structure of DegS H198P/D320A mutant modified by DFP in complex with OMP peptide (YQF)

Sohn, J., Sauer, R.T., Grant, R.A.

To be published

Released	2009-03-31
Method	X-RAY DIFFRACTION 3.002 Å
Organisms	Escherichia coli K-12
Macromolecule	Protease degS (protein) YQF peptide (protein)

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3GCO \| pdb_00003gco	Download File View File

Crystal structure of DegS H198P/D320A mutant modified by DFP in complex with DNRDGNVYQF OMP peptide

Sohn, J., Grant, R.A., Sauer, R.T.

(2009) Structure 17: 1411-1421

Released	2009-03-31
Method	X-RAY DIFFRACTION 2.798 Å
Organisms	Escherichia coli K-12
Macromolecule	DNRDGNVYQF peptide (protein) Protease degS (protein)

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3GDS \| pdb_00003gds	Download File View File

Crystal structure of DegS H198P/D320A mutant modified by DFP in complex with DNRDGNVYYF peptide

Sohn, J., Grant, R.A., Sauer, R.T.

(2009) Structure 17: 1411-1421

Released	2009-03-31
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Escherichia coli K-12
Macromolecule	DNRDGNVYYF peptide (protein) Protease degS (protein)

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3GDU \| pdb_00003gdu	Download File View File

Crystal structure of DegS H198P/D320A mutant modified by DFP and in complex with YRF peptide

Sohn, J., Grant, R.A., Sauer, R.T.

(2009) Structure 17: 1411-1421

Released	2009-03-31
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia coli K-12
Macromolecule	DegS protease (protein) YRF peptide (protein)

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3GDV \| pdb_00003gdv	Download File View File

Crystal structure of DegS H198P/D320A mutant modified by DFP and in complex with YQF peptide

Sohn, J., Grant, R.A., Sauer, R.T.

(2009) Structure 17: 1411-1421

Released	2009-03-31
Method	X-RAY DIFFRACTION 2.489 Å
Organisms	Escherichia coli K-12
Macromolecule	DegS protease (protein) YQF peptide (protein)

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3LGI \| pdb_00003lgi	Download File View File

Structure of the protease domain of DegS (DegS-deltaPDZ) at 1.65 A

Sohn, J., Grant, R.A., Sauer, R.T.

(2010) J Biological Chem 285: 34039-34047

Released	2010-08-25
Method	X-RAY DIFFRACTION 1.652 Å
Organisms	Escherichia coli K-12
Macromolecule	Protease degS (protein)
Unique Ligands	PO4

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3LGT \| pdb_00003lgt	Download File View File

Y162A/H198P double mutant of DegS-deltaPDZ protease

Sohn, J., Grant, R.A., Sauer, R.T.

(2010) J Biological Chem 285: 34039-34047

Released	2010-08-25
Method	X-RAY DIFFRACTION 2.68 Å
Organisms	Escherichia coli K-12
Macromolecule	Protease degS (protein)

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3LGU \| pdb_00003lgu	Download File View File

Y162A mutant of the DegS-deltaPDZ protease

Sohn, J., Grant, R.A., Sauer, R.T.

(2010) J Biological Chem 285: 34039-34047

Released	2010-08-25
Method	X-RAY DIFFRACTION 2.46 Å
Organisms	Escherichia coli K-12
Macromolecule	Protease degS (protein)

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3LGV \| pdb_00003lgv	Download File View File

H198P mutant of the DegS-deltaPDZ protease

Sohn, J., Grant, R.A., Sauer, R.T.

(2010) J Biological Chem 285: 34039-34047

Released	2010-08-25
Method	X-RAY DIFFRACTION 2.734 Å
Organisms	Escherichia coli K-12
Macromolecule	Protease degS (protein)

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3LGW \| pdb_00003lgw	Download File View File

H198P/T167V double mutant of DegS-deltaPDZ protease

Sohn, J., Grant, R.A., Sauer, R.T.

(2010) J Biological Chem 285: 34039-34047

Released	2010-08-25
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli K-12
Macromolecule	Protease degS (protein)

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3LGY \| pdb_00003lgy	Download File View File

R178A mutant of the DegS-deltaPDZ protease

Sohn, J., Grant, R.A., Sauer, R.T.

(2010) J Biological Chem 285: 34039-34047

Released	2010-08-25
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli K-12
Macromolecule	Protease degS (protein)
Unique Ligands	CL, MG

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3LH1 \| pdb_00003lh1	Download File View File

Q191A mutant of the DegS-deltaPDZ

Sohn, J., Grant, R.A., Sauer, R.T.

(2010) J Biological Chem 285: 34039-34047

Released	2010-08-25
Method	X-RAY DIFFRACTION 2.507 Å
Organisms	Escherichia coli K-12
Macromolecule	Protease degS (protein)

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3LH3 \| pdb_00003lh3	Download File View File

DFP modified DegS delta PDZ

Sohn, J., Grant, R.A., Sauer, R.T.

(2010) J Biological Chem 285: 34039-34047

Released	2010-08-25
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Escherichia coli K-12
Macromolecule	Protease degS (protein)

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6MKS \| pdb_00006mks	Download File View File

Cryo-EM structure of NLRC4-CARD filament

Zheng, W., Matyszewski, M., Sohn, J., Egelman, E.H.

(2018) J Biological Chem 293: 20240-20248

Released	2018-11-07
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Homo sapiens Vaccinia virus
Macromolecule	Chimera protein of NLR family CARD domain-containing protein 4 and EGFP (protein)

1 to 25 of 59 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1YM9 | pdb_00001ym9

1YMD | pdb_00001ymd

1YMK | pdb_00001ymk

1YML | pdb_00001yml

1YS0 | pdb_00001ys0

2A2K | pdb_00002a2k

2QF0 | pdb_00002qf0

2QF3 | pdb_00002qf3

2QGR | pdb_00002qgr

2RCE | pdb_00002rce

3B8J | pdb_00003b8j

3GCN | pdb_00003gcn

3GCO | pdb_00003gco

3GDS | pdb_00003gds

3GDU | pdb_00003gdu

3GDV | pdb_00003gdv

3LGI | pdb_00003lgi

3LGT | pdb_00003lgt

3LGU | pdb_00003lgu

3LGV | pdb_00003lgv

3LGW | pdb_00003lgw

3LGY | pdb_00003lgy

3LH1 | pdb_00003lh1

3LH3 | pdb_00003lh3

6MKS | pdb_00006mks