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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Silverman, D.N."

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Search Summary

This query matches 46 Structures.

Refinements

Structure Determination Methodology

experimental (46)

Scientific Name of Source Organism

	Homo sapiens (43)
	Bacillus subtilis subsp. subtilis str. 168 (1)
	Deinococcus radiodurans (1)
	Mus musculus (1)

Taxonomy

	Eukaryota (44)
	Bacteria (2)

Experimental Method

X-RAY DIFFRACTION (46)

Polymer Entity Type

Protein (46)

Refinement Resolution (Å)

	1.0 - 1.5 (6)
	1.5 - 2.0 (20)
	2.0 - 2.5 (16)
	2.5 - 3.0 (3)
	3.0 - 3.5 (1)

Release Date

	2000 - 2004 (7)
	2005 - 2009 (31)
	2010 - 2014 (7)
	2015 - 2019 (1)

Enzyme Classification Name

	Lyases (32)
	Oxidoreductases (13)
	Hydrolases (1)

Symmetry Type

	Asymmetric (31)
	Dihedral (11)
	Cyclic (6)

SCOP Classification

	All beta proteins (33)
	All alpha proteins (13)
	Alpha and beta proteins (a+b) (13)
	Alpha and beta proteins (a/b) (1)
	Artifacts (2)

AllSelected

1 to 25 of 46 Structures

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1EM1 \| pdb_00001em1	Download File View File

X-RAY CRYSTAL STRUCTURE FOR HUMAN MANGANESE SUPEROXIDE DISMUTASE, Q143A

Leveque, V., Stroupe, M.E., Lepock, J.R., Cabelli, D.E., Tainer, J.A., Nick, H.S., Silverman, D.N.

(2000) Biochemistry 39: 7131-7137

Released	2000-03-24
Method	X-RAY DIFFRACTION 2.13 Å
Organisms	Homo sapiens
Macromolecule	MANGANESE SUPEROXIDE DISMUTASE (protein)
Unique Ligands	MN, SO4

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1KEQ \| pdb_00001keq	Download File View File

Crystal Structure of F65A/Y131C Carbonic Anhydrase V, covalently modified with 4-chloromethylimidazole

Jude, K.M., Wright, S.K., Tu, C., Silverman, D.N., Viola, R.E., Christianson, D.W.

(2002) Biochemistry 41: 2485-2491

Released	2002-03-06
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Mus musculus
Macromolecule	F65A/Y131C-MI Carbonic Anhydrase V (protein)
Unique Ligands	4MZ, ACY, K, ZN

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1LUV \| pdb_00001luv	Download File View File

CATALYTIC AND STRUCTURAL EFFECTS OF AMINO-ACID SUBSTITUTION AT HIS 30 IN HUMAN MANGANESE SUPEROXIDE DISMUTASE: INSERTION OF VAL CGAMMA INTO THE SUBSTRATE ACCESS CHANNEL

Hearn, A.S., Stroupe, M.E., Ramilo, C.A., Luba, J.P., Cabelli, D.E., Tainer, J.A., Silverman, D.N.

(2003) Biochemistry 42: 2781-2789

Released	2002-06-19
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Superoxide dismutase [Mn] (protein)
Unique Ligands	MN

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1LUW \| pdb_00001luw	Download File View File

CATALYTIC AND STRUCTURAL EFFECTS OF AMINO-ACID SUBSTITUTION AT HIS 30 IN HUMAN MANGANESE SUPEROXIDE DISMUTASE: INSERTION OF VAL CGAMMA INTO THE SUBSTRATE ACCESS CHANNEL

Hearn, A.S., Stroupe, M.E., Ramilo, C.A., Luba, J.P., Cabelli, D.E., Tainer, J.A., Silverman, D.N.

(2003) Biochemistry 42: 2781-2789

Released	2002-06-19
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Superoxide dismutase [Mn] (protein)
Unique Ligands	MN, SO4

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1LZV \| pdb_00001lzv	Download File View File

Site-Specific Mutant (Tyr7 replaced with His) of Human Carbonic Anhydrase II

Tu, C.K., Qian, M., An, H., Wadhwa, N.R., Duda, D.M., Yoshioka, C., Pathak, Y., McKenna, R., Laipis, P.J., Silverman, D.N.

(2002) J Biological Chem 277: 38870-38876

Released	2002-10-23
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Carbonic Anhydrase II (protein)
Unique Ligands	ZN

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1MOO \| pdb_00001moo	Download File View File

Site Specific Mutant (H64A) of Human Carbonic Anhydrase II at high resolution

Duda, D.M., Govindasamy, L., Agbandje-McKenna, M., Tu, C.K., Silverman, D.N., McKenna, R.

(2003) Acta Crystallogr D Biol Crystallogr 59: 93-104

Released	2002-09-18
Method	X-RAY DIFFRACTION 1.05 Å
Organisms	Homo sapiens
Macromolecule	Carbonic Anhydrase II (protein)
Unique Ligands	4MZ, HG, ZN

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1SZX \| pdb_00001szx	Download File View File

Role Of Hydrogen Bonding In The Active Site Of Human Manganese Superoxide Dismutase

Greenleaf, W.B., Perry, J.J., Hearn, A.S., Cabelli, D.E., Lepock, J.R., Stroupe, M.E., Tainer, J.A., Nick, H.S., Silverman, D.N.

(2004) Biochemistry 43: 7038-7045

Released	2004-04-27
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	Superoxide dismutase [Mn], mitochondrial (protein)
Unique Ligands	MN

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1T9N \| pdb_00001t9n	Download File View File

Effect of Shuttle Location and pH Environment on H+ Transfer in Human Carbonic Anhydrase II

Fisher, Z., Hernandez Prada, J., Tu, C.K., Duda, D., Yoshioka, C., An, H., Govindasamy, L., Silverman, D.N., McKenna, R.

(2005) Biochemistry 44: 1097-1105

Released	2005-01-25
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Carbonic anhydrase II (protein)
Unique Ligands	SO4, ZN

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1TB0 \| pdb_00001tb0	Download File View File

Effect of Shuttle Location and pH Environment on H+ Transfer in Human Carbonic Anhydrase II

Fisher, Z., Hernandez Prada, J.A., Tu, C., Duda, D., Yoshioka, C., An, H., Govindasamy, L., Silverman, D.N., McKenna, R.

(2005) Biochemistry 44: 1097-1105

Released	2005-01-25
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Carbonic anhydrase II (protein)
Unique Ligands	CL, ZN

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1TBT \| pdb_00001tbt	Download File View File

Effect of Shuttle Location and pH Environment on H+ Transfer in Human Carbonic Anhydrase II

Fisher, Z., Hernandez Prada, J.A., Tu, C.K., Duda, D., Yoshioka, C., An, H., Govindasamy, L., Silverman, D.N., McKenna, R.

(2005) Biochemistry 44: 1097-1105

Released	2005-01-25
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Carbonic anhydrase II (protein)
Unique Ligands	ZN

Explore in 3D

1TE3 \| pdb_00001te3	Download File View File

Effect of Shuttle Location and pH Environment on H+ Transfer in Human Carbonic Anhydrase II

Fisher, Z., Hernandez Prada, J.A., Tu, C.K., Duda, D., Yoshioka, C., An, H., Govindasamy, L., Silverman, D.N., McKenna, R.

(2005) Biochemistry 44: 1097-1105

Released	2005-01-25
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Carbonic anhydrase II (protein)
Unique Ligands	CL, ZN

Explore in 3D

1TEQ \| pdb_00001teq	Download File View File

Effect of Shuttle Location and pH Environment on H+ Transfer in Human Carbonic Anhydrase II

Fisher, Z., Hernandez Prada, J.A., Tu, C.K., Duda, D., Yoshioka, C., An, H., Govindasamy, L., Silverman, D.N., McKenna, R.

(2005) Biochemistry 44: 1097-1105

Released	2005-01-25
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Carbonic anhydrase II (protein)
Unique Ligands	OH, ZN

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1TEU \| pdb_00001teu	Download File View File

Effect of Shuttle Location and pH Environment on H+ Transfer in Human Carbonic Anhydrase II

Fisher, Z., Hernandez Prada, J.A., Tu, C.K., Duda, D., Yoshioka, C., An, H., Govindasamy, L., Silverman, D.N., McKenna, R.

(2005) Biochemistry 44: 1097-1105

Released	2005-01-25
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Carbonic anhydrase II (protein)
Unique Ligands	ZN

Explore in 3D

1TG3 \| pdb_00001tg3	Download File View File

Effect of Shuttle Location and pH Environment on H+ Transfer in Human Carbonic Anhydrase II

Fisher, Z., Hernandez Prada, J.A., Tu, C.K., Duda, D., Yoshioka, C., An, H., Govindasamy, L., Silverman, D.N., McKenna, R.

(2005) Biochemistry 44: 1097-1105

Released	2005-01-25
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Carbonic anhydrase II (protein)
Unique Ligands	SO4, ZN

Explore in 3D

1TG9 \| pdb_00001tg9	Download File View File

Effect of Shuttle Location and pH Environment on H+ Transfer in Human Carbonic Anhydrase II

Fisher, Z., Hernandez Prada, J.A., Tu, C.K., Duda, D., Yoshioka, C., An, H., Govindasamy, L., Silverman, D.N., McKenna, R.

(2005) Biochemistry 44: 1097-1105

Released	2005-01-25
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Carbonic anhydrase II (protein)
Unique Ligands	ZN

Explore in 3D

1TH9 \| pdb_00001th9	Download File View File

Effect of Shuttle Location and pH Environment on H+ Transfer in Human Carbonic Anhydrase II

Fisher, Z., Hernandez Prada, J.A., Tu, C.K., Duda, D., Yoshioka, C., An, H., Govindasamy, L., Silverman, D.N., McKenna, R.

(2005) Biochemistry 44: 1097-1105

Released	2005-01-25
Method	X-RAY DIFFRACTION 1.63 Å
Organisms	Homo sapiens
Macromolecule	Carbonic anhydrase II (protein)
Unique Ligands	SO4, ZN

Explore in 3D

1THK \| pdb_00001thk	Download File View File

Effect of Shuttle Location and pH Environment on H+ Transfer in Human Carbonic Anhydrase II

Fisher, Z., Hernandez Prada, J.A., Tu, C.K., Duda, D., Yoshioka, C., An, H., Govindasamy, L., Silverman, D.N., McKenna, R.

(2005) Biochemistry 44: 1097-1105

Released	2005-01-25
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Carbonic anhydrase II (protein)
Unique Ligands	ZN

Explore in 3D

1XDC \| pdb_00001xdc	Download File View File

Hydrogen Bonding in Human Manganese Superoxide Dismutase containing 3-Fluorotyrosine

Ayala, I., Perry, J.J., Szczepanski, J., Cabelli, D.E., Tainer, J.A., Vala, M.T., Nick, H.S., Silverman, D.N.

(2005) Biophys J 89: 4171-4179

Released	2005-03-22
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Superoxide dismutase [Mn], mitochondrial (protein)
Unique Ligands	MN

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1XIL \| pdb_00001xil	Download File View File

HYDROGEN BONDING IN HUMAN MANGANESE SUPEROXIDE DISMUTASE CONTAINING 3-FLUOROTYROSINE

Ayala, I., Perry, J.J., Szczepanski, J., Cabelli, D.E., Tainer, J.A., Vala, M.T., Nick, H.S., Silverman, D.N.

(2005) Biophys J 89: 4171-4179

Released	2005-03-08
Method	X-RAY DIFFRACTION 1.53 Å
Organisms	Homo sapiens
Macromolecule	Superoxide dismutase [Mn], mitochondrial (protein)
Unique Ligands	MN

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1XV8 \| pdb_00001xv8	Download File View File

Crystal Structure of Human Salivary Alpha-Amylase Dimer

Fisher, S.Z., Govindasamy, L., Tu, C.K., Silverman, D.N., Rajaniemi, H., McKenna, R.

To be published

Released	2005-10-11
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	Alpha-amylase (protein)
Unique Ligands	CA, CL

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1YO0 \| pdb_00001yo0	Download File View File

Proton Transfer from His200 in Human Carbonic Anhydrase II

Bhatt, D., Tu, C., Fisher, S.Z., Hernandez Prada, J.A., McKenna, R., Silverman, D.N.

(2005) Proteins 61: 239-245

Released	2005-09-20
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Carbonic anhydrase II (protein)
Unique Ligands	CL, ZN

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1YO1 \| pdb_00001yo1	Download File View File

Proton Transfer from His200 in Human Carbonic Anhydrase II

Bhatt, D., Tu, C., Fisher, S.Z., Hernandez Prada, J.A., McKenna, R., Silverman, D.N.

(2005) Proteins 61: 239-245

Released	2005-09-20
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Carbonic anhydrase II (protein)
Unique Ligands	SO4, ZN

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1YO2 \| pdb_00001yo2	Download File View File

Proton Transfer from His200 in Human Carbonic Anhydrase II

Bhatt, D., Tu, C., Fisher, S.Z., Hernandez Prada, J.A., McKenna, R., Silverman, D.N.

(2005) Proteins 61: 239-245

Released	2005-09-20
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Carbonic anhydrase II (protein)
Unique Ligands	ZN

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1Z93 \| pdb_00001z93	Download File View File

Human Carbonic Anhydrase III:Structural and Kinetic study of Catalysis and Proton Transfer.

Duda, D.M., Tu, C., Fisher, S.Z., An, H., Yoshioka, C., Govindasamy, L., Laipis, P.J., Agbandje-McKenna, M., Silverman, D.N., McKenna, R.

(2005) Biochemistry 44: 10046-10053

Released	2005-08-09
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Carbonic anhydrase III (protein)
Unique Ligands	ZN

Explore in 3D

1Z97 \| pdb_00001z97	Download File View File

Human Carbonic Anhydrase III: Structural and Kinetic Study of Catalysis and Proton Transfer.

Duda, D.M., Tu, C., Fisher, S.Z., An, H., Yoshioka, C., Govindasamy, L., Laipis, P.J., Agbandje-McKenna, M., Silverman, D.N., McKenna, R.

(2005) Biochemistry 44: 10046-10053

Released	2005-08-09
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Carbonic anhydrase III (protein)
Unique Ligands	ZN

1 to 25 of 46 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1EM1 | pdb_00001em1

1KEQ | pdb_00001keq

1LUV | pdb_00001luv

1LUW | pdb_00001luw

1LZV | pdb_00001lzv

1MOO | pdb_00001moo

1SZX | pdb_00001szx

1T9N | pdb_00001t9n

1TB0 | pdb_00001tb0

1TBT | pdb_00001tbt

1TE3 | pdb_00001te3

1TEQ | pdb_00001teq

1TEU | pdb_00001teu

1TG3 | pdb_00001tg3

1TG9 | pdb_00001tg9

1TH9 | pdb_00001th9

1THK | pdb_00001thk

1XDC | pdb_00001xdc

1XIL | pdb_00001xil

1XV8 | pdb_00001xv8

1YO0 | pdb_00001yo0

1YO1 | pdb_00001yo1

1YO2 | pdb_00001yo2

1Z93 | pdb_00001z93

1Z97 | pdb_00001z97