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235,183 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Sato, S."

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Search Summary

This query matches 69 Structures.

Refinements

Structure Determination Methodology

experimental (69)

Scientific Name of Source Organism

	Homo sapiens (47)
	Microbacterium saccharophilum (4)
	Pyrobaculum aerophilum (3)
	synthetic construct (3)
	Geobacillus stearothermophilus (2)
	Nitratidesulfovibrio vulgaris str. 'Miyazaki F (2)
	Streptomyces fradiae (2)
	Tokunagayusurika akamusi (2)
	Giardia intestinalis (1)
	Human immunodeficiency virus 1 (1)

More...

Taxonomy

	Eukaryota (52)
	Bacteria (12)
	Archaea (3)
	other sequences (3)
	Riboviria (1)
	Varidnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (61)
	SOLUTION NMR (6)
	ELECTRON MICROSCOPY (2)

Polymer Entity Type

	Protein (69)
	DNA (3)

Refinement Resolution (Å)

	1.0 - 1.5 (4)
	1.5 - 2.0 (19)
	2.0 - 2.5 (17)
	2.5 - 3.0 (20)
	3.0 - 3.5 (2)
	3.5 - 4.0 (1)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (7)
	2010 - 2014 (10)
	2015 - 2019 (14)
	2020 - 2024 (33)
	2025 - 2029 (4)

Enzyme Classification Name

	Transferases (23)
	Oxidoreductases (27)
	Hydrolases (6)
	Lyases (1)

Symmetry Type

	Asymmetric (55)
	Cyclic (15)

SCOP Classification

	All alpha proteins (8)
	Alpha and beta proteins (a+b) (5)
	All beta proteins (3)
	Artifacts (1)

AllSelected

1 to 25 of 69 Structures

Page 1 of 3

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1SS1 \| pdb_00001ss1	Download File View File

STAPHYLOCOCCAL PROTEIN A, B-DOMAIN, Y15W MUTANT, NMR, 25 STRUCTURES

Sato, S., Religa, T.L., Daggett, V., Fersht, A.R.

(2004) Proc Natl Acad Sci U S A 101: 6952-6956

Released	2004-04-06
Method	SOLUTION NMR
Organisms	Staphylococcus aureus
Macromolecule	Immunoglobulin G binding protein A (protein)

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1W4E \| pdb_00001w4e	Download File View File

Peripheral-subunit binding domains from mesophilic, thermophilic, and hyperthermophilic bacteria fold by ultrafast, apparently two-state transitions

Ferguson, N., Sharpe, T.D., Schartau, P.J., Allen, M.D., Johnson, C.M., Sato, S., Fersht, A.R.

(2005) J Mol Biology 353: 427

Released	2005-07-20
Method	SOLUTION NMR
Organisms	Geobacillus stearothermophilus
Macromolecule	DIHYDROLIPOYLLYSINE-RESIDUE ACETYLTRANSFERASE (protein)

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1W4G \| pdb_00001w4g	Download File View File

Peripheral-subunit binding domains from mesophilic, thermophilic, and hyperthermophilic bacteria fold by ultrafast, apparently two-state folding transitions

Ferguson, N., Sharpe, T.D., Schartau, P.J., Allen, M.D., Johnson, C.M., Sato, S., Fersht, A.R.

(2005) J Mol Biology 353: 427

Released	2005-07-20
Method	SOLUTION NMR
Organisms	Geobacillus stearothermophilus
Macromolecule	DIHYDROLIPOYLLYSINE-RESIDUE ACETYLTRANSFERASE (protein)

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1W4I \| pdb_00001w4i	Download File View File

Peripheral-subunit binding domains from mesophilic, thermophilic, and hyperthermophilic bacteria fold by ultrafast, apparently two-state transitions

Ferguson, N., Sharpe, T.D., Schartau, P.J., Allen, M.D., Johnson, C.M., Sato, S., Fersht, A.R.

(2005) J Mol Biology 353: 427

Released	2005-07-20
Method	SOLUTION NMR
Organisms	Pyrobaculum aerophilum
Macromolecule	PYRUVATE DEHYDROGENASE E2 (protein)

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1W4J \| pdb_00001w4j	Download File View File

Peripheral-subunit binding domains from mesophilic, thermophilic, and hyperthermophilic bacteria fold by ultrafast, apparently two-state transitions

Ferguson, N., Sharpe, T.D., Schartau, P.J., Allen, M.D., Johnson, C.M., Sato, S., Fersht, A.R.

(2005) J Mol Biology 353: 427-446

Released	2005-07-20
Method	SOLUTION NMR
Organisms	Pyrobaculum aerophilum
Macromolecule	PYRUVATE DEHYDROGENASE E2 (protein)

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1W4K \| pdb_00001w4k	Download File View File

Peripheral-subunit binding domains from mesophilic, thermophilic, and hyperthermophilic bacteria fold by ultrafast, apparently two-state transitions

Ferguson, N., Sharpe, T.D., Schartau, P.J., Allen, M.D., Johnson, C.M., Sato, S., Fersht, A.R.

(2005) J Mol Biology 353: 427

Released	2005-07-20
Method	SOLUTION NMR
Organisms	Pyrobaculum aerophilum
Macromolecule	PYRUVATE DEHYDROGENASE E2 (protein)

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1X3K \| pdb_00001x3k	Download File View File

Crystal structure of a hemoglobin component (TA-V) from Tokunagayusurika akamusi

Kuwada, T., Hasegawa, T., Sato, S., Sato, I., Ishikawa, K., Takagi, T., Shishikura, F.

(2007) Gene 398: 29-34

Released	2005-05-24
Method	X-RAY DIFFRACTION 1.64 Å
Organisms	Tokunagayusurika akamusi
Macromolecule	hemoglobin component V (protein)
Unique Ligands	HEM

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1X46 \| pdb_00001x46	Download File View File

Crystal structure of a hemoglobin component (TA-VII) from Tokunagayusurika akamusi

Kuwada, T., Hasegawa, T., Sato, S., Sato, I., Ishikawa, K., Takagi, T., Shishikura, F.

(2007) Gene 398: 29-34

Released	2005-05-24
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Tokunagayusurika akamusi
Macromolecule	hemoglobin component VII (protein)
Unique Ligands	HEM

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3A99 \| pdb_00003a99	Download File View File

Structure of PIM-1 kinase crystallized in the presence of P27KIP1 Carboxy-terminal peptide

Morishita, D., Takami, M., Yoshikawa, S., Katayama, R., Sato, S., Kukimoto-Niino, M., Umehara, T., Shirouzu, M., Sekimizu, K., Yokoyama, S., Fujita, N.

(2011) J Biological Chem 286: 2681-2688

Released	2010-11-03
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Proto-oncogene serine/threonine-protein kinase pim-1 (protein)
Unique Ligands	ANP, MG

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3ABT \| pdb_00003abt	Download File View File

Crystal Structure of LSD1 in complex with trans-2-pentafluorophenylcyclopropylamine

Mimasu, S., Umezawa, N., Sato, S., Higuchi, T., Umehara, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2010) Biochemistry 49: 6494-6503

Released	2010-07-07
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific histone demethylase 1 (protein)
Unique Ligands	2PF

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3ABU \| pdb_00003abu	Download File View File

Crystal Structure of LSD1 in complex with a 2-PCPA derivative, S1201

Mimasu, S., Umezawa, N., Sato, S., Higuchi, T., Umehara, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2010) Biochemistry 49: 6494-6503

Released	2010-07-07
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific histone demethylase 1 (protein)
Unique Ligands	12F

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3AJI \| pdb_00003aji	Download File View File

Structure of Gankyrin-S6ATPase photo-cross-linked site-specifically, and incoporated by genetic code expansion

Sato, S., Mimasu, S., Sato, A., Hino, N., Sakamoto, K., Umehara, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2011) Biochemistry 50: 250-257

Released	2010-12-22
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Mus musculus
Macromolecule	26S proteasome non-ATPase regulatory subunit 10 (protein) Proteasome (Prosome, macropain) 26S subunit, ATPase, 4 (protein)

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3AMF \| pdb_00003amf	Download File View File

E13R mutant of FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F)

Sato, S., Nakanishi, T., Inoue, H., Kitamura, M.

To be published

Released	2011-10-05
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Nitratidesulfovibrio vulgaris str. 'Miyazaki F
Macromolecule	FMN-binding protein (protein)
Unique Ligands	CL, FMN

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3AWH \| pdb_00003awh	Download File View File

E13K mutant of FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F)

Sato, S., Nakanishi, T., Inoue, H., Kitamura, M.

To be published

Released	2012-04-18
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Nitratidesulfovibrio vulgaris str. 'Miyazaki F
Macromolecule	FMN-binding protein (protein)
Unique Ligands	CL, FMN

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3WPU \| pdb_00003wpu	Download File View File

Full-length beta-fructofuranosidase from Microbacterium saccharophilum K-1

Yokoi, G., Mori, M., Sato, S., Miyazaki, T., Nishikawa, A., Tonozuka, T.

(2014) Appl Microbiol Biotechnol 98: 6667-6677

Released	2014-03-12
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Microbacterium saccharophilum
Macromolecule	Beta-fructofuranosidase (protein)
Unique Ligands	GOL

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3WPV \| pdb_00003wpv	Download File View File

Microbacterium saccharophilum K-1 beta-fructofuranosidase mutant T47S/F447V/F470Y/P500S

Yokoi, G., Mori, M., Sato, S., Miyazaki, T., Nishikawa, A., Tonozuka, T.

(2014) Appl Microbiol Biotechnol 98: 6667-6677

Released	2014-03-12
Method	X-RAY DIFFRACTION 1.81 Å
Organisms	Microbacterium saccharophilum
Macromolecule	Beta-fructofuranosidase (protein)
Unique Ligands	GOL

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3WPY \| pdb_00003wpy	Download File View File

Microbacterium saccharophilum K-1 beta-fructofuranosidase mutant T47S/S200T/F447V/P500S

Yokoi, G., Mori, M., Sato, S., Miyazaki, T., Nishikawa, A., Tonozuka, T.

(2014) Appl Microbiol Biotechnol 98: 6667-6677

Released	2014-03-12
Method	X-RAY DIFFRACTION 2 Å
Organisms	Microbacterium saccharophilum
Macromolecule	Beta-fructofuranosidase (protein)

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3WPZ \| pdb_00003wpz	Download File View File

Microbacterium saccharophilum K-1 beta-fructofuranosidase mutant T47S/S200T/F447P/F470Y/P500S

Yokoi, G., Mori, M., Sato, S., Miyazaki, T., Nishikawa, A., Tonozuka, T.

(2014) Appl Microbiol Biotechnol 98: 6667-6677

Released	2014-03-12
Method	X-RAY DIFFRACTION 2.27 Å
Organisms	Microbacterium saccharophilum
Macromolecule	Beta-fructofuranosidase (protein)

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5CPG \| pdb_00005cpg	Download File View File

R-Hydratase PhaJ1 from Pseudomonas aeruginosa in the unliganded form

Tsuge, T., Sato, S., Hiroe, A., Ishizuka, K., Kanazawa, H., Kanagarajan, S., Shiro, Y., Hisano, T.

(2015) Appl Environ Microbiol 81: 8076-8083

Released	2015-10-07
Method	X-RAY DIFFRACTION 1.694 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	(R)-specific enoyl-CoA hydratase (protein)
Unique Ligands	GOL

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5H6Q \| pdb_00005h6q	Download File View File

Crystal structure of LSD1-CoREST in complex with peptide 11

Kikuchi, M., Amano, Y., Sato, S., Yokoyama, S., Umezawa, N., Higuchi, T., Umehara, T.

(2017) Bioorg Med Chem 25: 2617-2624

Released	2017-04-12
Method	X-RAY DIFFRACTION 2.53 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific histone demethylase 1A (protein) REST corepressor 1 (protein) peptide SRTMQTARKSTGGKAPRKQLK (protein)
Unique Ligands	FAD, GOL

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5H6R \| pdb_00005h6r	Download File View File

Crystal structure of LSD1-CoREST in complex with peptide 13

Kkuchi, M., Amano, Y., Sato, S., Yokoyama, S., Umezawa, N., Higuchi, T., Umehara, T.

(2017) Bioorg Med Chem 25: 2617-2624

Released	2017-04-12
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific histone demethylase 1A (protein) PEPTIDE (HSE)RTMQTARKSTGGKAPRKQLK (protein) REST corepressor 1 (protein)
Unique Ligands	FAD, GOL

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5X60 \| pdb_00005x60	Download File View File

Crystal structure of LSD1-CoREST in complex with peptide 9

Kikuchi, M., Amano, Y., Sato, S., Yokoyama, S., Umezawa, N., Higuchi, T., Umehara, T.

(2017) Bioorg Med Chem 25: 2617-2624

Released	2017-04-12
Method	X-RAY DIFFRACTION 2.69 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific histone demethylase 1A (protein) PEPTIDE SRTMQTARKSTGGKAPRKQL (protein) REST corepressor 1 (protein)
Unique Ligands	FAD, GOL

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5YJB \| pdb_00005yjb	Download File View File

LSD1-CoREST in complex with 4-[5-(piperidin-4-ylmethoxy)-2-(p-tolyl)pyridin-3-yl]benzonitrile

Niwa, H., Sato, S., Hashimoto, T., Matsuno, K., Umehara, T.

(2018) Molecules 23:

Released	2018-07-04
Method	X-RAY DIFFRACTION 2.96 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific histone demethylase 1A (protein) REST corepressor 1 (protein)
Unique Ligands	8WC, FAD, GOL

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5YLT \| pdb_00005ylt	Download File View File

Crystal structure of SET7/9 in complex with a cyproheptadine derivative

Hirano, T., Fujiwara, T., Niwa, H., Hirano, M., Ohira, K., Okazaki, Y., Sato, S., Umehara, T., Maemoto, Y., Ito, A., Yoshida, M., Kagechika, H.

(2018) ChemMedChem 13: 1530-1540

Released	2018-06-20
Method	X-RAY DIFFRACTION 1.69 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase SETD7 (protein)
Unique Ligands	C7N, GOL, SFG