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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Pochetti, G."

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Search Summary

This query matches 43 Structures.

Refinements

Structure Determination Methodology

experimental (43)

Scientific Name of Source Organism

	Homo sapiens (40)
	Klebsiella pneumoniae (2)
	Crotalus adamanteus (1)

Taxonomy

	Eukaryota (41)
	Bacteria (2)

Experimental Method

X-RAY DIFFRACTION (43)

Polymer Entity Type

Protein (43)

Refinement Resolution (Å)

	1.0 - 1.5 (4)
	1.5 - 2.0 (8)
	2.0 - 2.5 (19)
	2.5 - 3.0 (11)
	3.0 - 3.5 (1)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (2)
	2005 - 2009 (15)
	2010 - 2014 (8)
	2015 - 2019 (9)
	2020 - 2024 (8)

Enzyme Classification Name

Hydrolases (13)

Symmetry Type

	Asymmetric (23)
	Cyclic (28)

SCOP Classification

	All alpha proteins (27)
	Alpha and beta proteins (a+b) (11)
	Multi-domain proteins (alpha and beta) (2)

AllSelected

1 to 25 of 43 Structures

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1I73 \| pdb_00001i73	Download File View File

COMPLEX OF PRO-LEU-L-TRP PHOSPHONATE WITH THE CATALITIC DOMAIN OF MATRIX METALLO PROTEINASE-8 (MET80 FORM)

Gavuzzo, E., Pochetti, G., Mazza, F., Gallina, C., Gorini, B., D'Alessio, S., Pieper, M., Tschesche, H., Tucker, P.A.

(2000) J Med Chem 43: 3377-3385

Released	2001-03-21
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Homo sapiens
Macromolecule	NEUTROPHIL COLLAGENASE (protein) THREE RESIDUE PEPTIDE INHIBITOR (protein)
Unique Ligands	CA, ZN

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1I76 \| pdb_00001i76	Download File View File

COMPLEX OF 2-(BIPHENYL-4-SULFONYL)-1,2,3,4-TETRAHYDRO-ISOQUINOLINE-3-CARBOXYLIC ACID (D-TIC DERIVATIVE) WITH T CATALITIC DOMAIN OF MATRIX METALLO PROTEINASE-8 (MET80 FORM)

Gavuzzo, E., Pochetti, G., Mazza, F., Gallina, C., Gorini, B., D'Alessio, S., Pieper, M., Tschesche, H., Tucker, P.A.

(2000) J Med Chem 43: 3377-3385

Released	2001-03-21
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Homo sapiens
Macromolecule	NEUTROPHIL COLLAGENASE (protein)
Unique Ligands	BSI, CA, ZN

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1ZP5 \| pdb_00001zp5	Download File View File

Crystal structure of the complex between MMP-8 and a N-hydroxyurea inhibitor

Campestre, C., Agamennone, M., Tortorella, P., Preziuso, S., Biasone, A., Gavuzzo, E., Pochetti, G., Mazza, F., Tschesche, H., Gallina, C.

(2006) Bioorg Med Chem Lett 16: 20-24

Released	2005-12-06
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Neutrophil collagenase (protein)
Unique Ligands	2NI, CA, ZN

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1ZS0 \| pdb_00001zs0	Download File View File

Crystal structure of the complex between MMP-8 and a phosphonate inhibitor (S-enantiomer)

Pochetti, G., Gavuzzo, E., Campestre, C., Agamennone, M., Tortorella, P., Consalvi, V., Gallina, C., Hiller, O., Tschesche, H., Tucker, P.A., Mazza, F.

(2006) J Med Chem 49: 923-931

Released	2006-05-02
Method	X-RAY DIFFRACTION 1.56 Å
Organisms	Homo sapiens
Macromolecule	Neutrophil collagenase (protein)
Unique Ligands	CA, EIN, MES, ZN

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1ZVX \| pdb_00001zvx	Download File View File

Crystal structure of the complex between MMP-8 and a phosphonate inhibitor (R-enantiomer)

Pochetti, G., Gavuzzo, E., Campestre, C., Agamennone, M., Tortorella, P., Consalvi, V., Gallina, C., Hiller, O., Tschesche, H., Tucker, P.A., Mazza, F.

(2006) J Med Chem 49: 923-931

Released	2006-05-16
Method	X-RAY DIFFRACTION 1.87 Å
Organisms	Homo sapiens
Macromolecule	Neutrophil collagenase (protein)
Unique Ligands	CA, FIN, ZN

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2I4J \| pdb_00002i4j	Download File View File

Crystal structure of the complex between PPARgamma and the agonist LT160 (ureidofibrate derivative)

Pochetti, G., Mazza, F.

(2007) J Biological Chem 282: 17314-17324

Released	2007-04-17
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	DRJ

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2I4P \| pdb_00002i4p	Download File View File

Crystal structure of the complex between PPARgamma and the partial agonist LT127 (ureidofibrate derivative). Structure obtained from crystals of the apo-form soaked for 30 days.

Pochetti, G., Mazza, F.

(2007) J Biological Chem 282: 17314-17324

Released	2007-04-17
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	DRH

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2I4Z \| pdb_00002i4z	Download File View File

Crystal structure of the complex between PPARgamma and the partial agonist LT127 (ureidofibrate derivative). This structure has been obtained from crystals soaked for 6 hours.

Pochetti, G., Mazza, F.

(2007) J Biological Chem 282: 17314-17324

Released	2007-04-17
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	DRH

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3B3K \| pdb_00003b3k	Download File View File

Crystal structure of the complex between PPARgamma and the full agonist LT175

Pochetti, G., Montanari, R., Mazza, F., Loiodice, F., Fracchiolla, G., Crestani, M., Godio, C.

(2008) J Med Chem 51: 7768-7776

Released	2008-10-28
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	LRG

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3CDP \| pdb_00003cdp	Download File View File

Crystal structure of PPAR-gamma LBD complexed with a partial agonist, analogue of clofibric acid

Pochetti, G., Montanari, R., Mazza, F.

(2012) Bioorg Med Chem 20: 2141-2151

Released	2009-01-13
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	YRG

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3CDS \| pdb_00003cds	Download File View File

Crystal structure of the complex between PPAR-gamma and the agonist LT248 (clofibric acid analogue)

Pochetti, G., Montanari, R., Mazza, F.

(2008) J Med Chem 51: 7768-7776

Released	2008-12-30
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	GRR

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3D6D \| pdb_00003d6d	Download File View File

Crystal Structure of the complex between PPARgamma LBD and the LT175(R-enantiomer)

Pochetti, G., Montanari, R.

(2008) J Med Chem 51: 7768-7776

Released	2008-12-30
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	LRG

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3DNG \| pdb_00003dng	Download File View File

Crystal structure of the complex between MMP-8 and a non-zinc chelating inhibitor

Pochetti, G., Montanari, R., Mazza, F.

(2009) J Med Chem 52: 1040-1049

Released	2009-03-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Neutrophil collagenase (protein)
Unique Ligands	AXA, CA, ZN

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3DPE \| pdb_00003dpe	Download File View File

Crystal structure of the complex between MMP-8 and a non-zinc chelating inhibitor

Pochetti, G., Montanari, R., Mazza, F.

(2009) J Med Chem 52: 1040-1049

Released	2009-03-03
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Neutrophil collagenase (protein)
Unique Ligands	AXB, CA, ZN

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3DPF \| pdb_00003dpf	Download File View File

Crystal structure of the complex between MMP-8 and a non-zinc chelating inhibitor

Pochetti, G., Montanari, R., Mazza, F.

(2009) J Med Chem 52: 1040-1049

Released	2009-03-03
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Neutrophil collagenase (protein)
Unique Ligands	AXB, CA, HAE, ZN

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3HO0 \| pdb_00003ho0	Download File View File

Crystal structure of the PPARgamma-LBD complexed with a new aryloxy-3phenylpropanoic acid

Pochetti, G., Montanari, R., Mazza, F., Loiodice, F., Fracchiolla, G., Laghezza, A., Lavecchia, A., Novellino, E.

(2009) J Med Chem 52: 6382-6393

Released	2009-10-27
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	DKD

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3HOD \| pdb_00003hod	Download File View File

Crystal structure of the PPARgamma-LBD complexed with a new aryloxy-3phenylpropanoic acid

Pochetti, G., Montanari, R., Mazza, F., Loiodice, F., Fracchiolla, G., Laghezza, A., Lavecchia, A., Novellino, E.

(2009) J Med Chem 52: 6382-6393

Released	2009-10-27
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	ZZH

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3R8I \| pdb_00003r8i	Download File View File

Crystal Structure of PPARgamma with an achiral ureidofibrate derivative (RT86)

Pochetti, G., Montanari, R., Loiodice, F., Laghezza, A., Fracchiolla, G., Lavecchia, A., Novellino, E., Crestani, M.

(2012) J Med Chem 55: 37-54

Released	2012-01-11
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	XCX

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4AIG \| pdb_00004aig	Download File View File

ADAMALYSIN II WITH PHOSPHONATE INHIBITOR

Pochetti, G., Mazza, F., Gavuzzo, E., Cirilli, M.

(1997) FEBS Lett 418: 319-322

Released	1998-11-11
Method	X-RAY DIFFRACTION 2 Å
Organisms	Crotalus adamanteus
Macromolecule	ADAMALYSIN II (protein)
Unique Ligands	CA, FLX, ZN

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4E4K \| pdb_00004e4k	Download File View File

Crystal Structure of PPARgamma with the ligand JO21

Pochetti, G., Montanari, R., Loiodice, F., Fracchiolla, G., Laghezza, A., Carbonara, G., Piemontese, L., Lavecchia, A., Novellino, E.

(2013) J Med Chem 56: 60-72

Released	2013-01-23
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	RRG

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4E4Q \| pdb_00004e4q	Download File View File

Crystal structure of PPARgamma with the ligand FS214

Pochetti, G., Montanari, R., Loiodice, F., Fracchiolla, G., Laghezza, A., Carbonara, G., Piemontese, L., Lavecchia, A., Novellino, E.

(2013) J Med Chem 56: 60-72

Released	2013-01-23
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	RRH

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4JAZ \| pdb_00004jaz	Download File View File

Crystal structure of the complex between PPARgamma LBD and trans-resveratrol

Pochetti, G., Capelli, D., Montanari, R., Calleri, E., Moaddel, R., Temporini, C.

(2014) Chembiochem 15: 1154-1160

Released	2014-02-12
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	STL

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4JL4 \| pdb_00004jl4	Download File View File

Crystal structure of the complex between PPARgamma LBD and the ligand LJ570 [(2S)-3-(biphenyl-4-yl)-2-(biphenyl-4-yloxy)propanoic acid]

Pochetti, G., Montanari, R., Capelli, D.

(2018) J Med Chem 61: 8282-8298

Released	2014-03-12
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	AXY

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4L96 \| pdb_00004l96	Download File View File

Structure of the complex between the F360L PPARgamma mutant and the ligand LT175 (space group I222)

Pochetti, G., Montanari, R., Capelli, D., Chiaraluce, R., Consalvi, V., Pasquo, A., Lori, C., Laghezza, A., Loiodice, F.

(2014) Acta Crystallogr D Biol Crystallogr 70: 1965-1976

Released	2014-06-25
Method	X-RAY DIFFRACTION 2.38 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	LRG

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4L98 \| pdb_00004l98	Download File View File

Crystal structure of the complex of F360L PPARgamma mutant with the ligand LT175

Pochetti, G., Montanari, R., Consalvi, V., Chiaraluce, R., Pasquo, A., Capelli, D., Loiodice, F., Laghezza, A., Lori, C.

(2014) Acta Crystallogr D Biol Crystallogr 70: 1965-1976

Released	2014-06-25
Method	X-RAY DIFFRACTION 2.28 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	LRG

1 to 25 of 43 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1I73 | pdb_00001i73

1I76 | pdb_00001i76

1ZP5 | pdb_00001zp5

1ZS0 | pdb_00001zs0

1ZVX | pdb_00001zvx

2I4J | pdb_00002i4j

2I4P | pdb_00002i4p

2I4Z | pdb_00002i4z

3B3K | pdb_00003b3k

3CDP | pdb_00003cdp

3CDS | pdb_00003cds

3D6D | pdb_00003d6d

3DNG | pdb_00003dng

3DPE | pdb_00003dpe

3DPF | pdb_00003dpf

3HO0 | pdb_00003ho0

3HOD | pdb_00003hod

3R8I | pdb_00003r8i

4AIG | pdb_00004aig

4E4K | pdb_00004e4k

4E4Q | pdb_00004e4q

4JAZ | pdb_00004jaz

4JL4 | pdb_00004jl4

4L96 | pdb_00004l96

4L98 | pdb_00004l98