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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Lazarus, M.B."

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Search Summary

This query matches 36 Structures.

Refinements

Structure Determination Methodology

experimental (36)

Scientific Name of Source Organism

	Homo sapiens (29)
	Escherichia coli K-12 (5)
	Escherichia coli (2)
	synthetic construct (1)

Taxonomy

	Eukaryota (29)
	Bacteria (7)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (35)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

	Protein (36)
	RNA (1)

Refinement Resolution (Å)

	1.5 - 2.0 (14)
	2.0 - 2.5 (13)
	2.5 - 3.0 (7)
	3.0 - 3.5 (2)

Release Date

	2010 - 2014 (15)
	2015 - 2019 (12)
	2020 - 2024 (9)

Enzyme Classification Name

	Transferases (25)
	Oxidoreductases (4)
	Hydrolases (7)
	Translocases (5)

Symmetry Type

	Asymmetric (30)
	Cyclic (12)
	Tetrahedral (2)
	Dihedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (5)
	Alpha and beta proteins (a/b) (5)
	Artifacts (1)

AllSelected

1 to 25 of 36 Structures

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3PE3 \| pdb_00003pe3	Download File View File

Structure of human O-GlcNAc transferase and its complex with a peptide substrate

Lazarus, M.B., Nam, Y., Jiang, J., Sliz, P., Walker, S.

(2011) Nature 469: 564-567

Released	2011-01-19
Method	X-RAY DIFFRACTION 2.78 Å
Organisms	Homo sapiens
Macromolecule	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit (protein)
Unique Ligands	UDP

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3PE4 \| pdb_00003pe4	Download File View File

Structure of human O-GlcNAc transferase and its complex with a peptide substrate

Lazarus, M.B., Nam, Y., Jiang, J., Sliz, P., Walker, S.

(2011) Nature 469: 564-567

Released	2011-01-19
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	Casein kinase II subunit alpha (protein) UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit (protein)
Unique Ligands	SO4, UDP

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3TAX \| pdb_00003tax	Download File View File

A Neutral Diphosphate Mimic Crosslinks the Active Site of Human O-GlcNAc Transferase

Lazarus, M.B., Jiang, J., Pasquina, L., Sliz, P., Walker, S.

(2011) Nat Chem Biol 8: 72-77

Released	2011-11-16
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Homo sapiens
Macromolecule	Casein kinase II subunit alpha (protein) UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit (protein)
Unique Ligands	FOR, SO4, UDP

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4GYW \| pdb_00004gyw	Download File View File

Crystal structure of human O-GlcNAc Transferase in complex with UDP and a glycopeptide

Lazarus, M.B., Jiang, J., Gloster, T.M., Zandberg, W.F., Vocadlo, D.J., Walker, S.

(2012) Nat Chem Biol 8: 966-968

Released	2012-10-31
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Casein kinase II subunit alpha (protein) UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit (protein)
Unique Ligands	NAG, SO4, UDP

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4GYY \| pdb_00004gyy	Download File View File

Crystal structure of human O-GlcNAc Transferase with UDP-5SGlcNAc and a peptide substrate

Lazarus, M.B., Jiang, J., Gloster, T.M., Zandberg, W.F., Vocadlo, D.J., Walker, S.

(2012) Nat Chem Biol 8: 966-968

Released	2012-10-31
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Casein kinase II subunit alpha (protein) UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit (protein)
Unique Ligands	12V, SO4

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4GZ3 \| pdb_00004gz3	Download File View File

Crystal structure of human O-GlcNAc Transferase with UDP and a thioglycopeptide

Lazarus, M.B., Jiang, J., Gloster, T.M., Zandberg, W.F., Vocadlo, D.J., Walker, S.

(2012) Nat Chem Biol 8: 966-968

Released	2012-10-31
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Casein kinase II subunit alpha (protein) UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit (protein)
Unique Ligands	0YT, SO4, UDP

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4GZ5 \| pdb_00004gz5	Download File View File

Crystal structure of human O-GlcNAc Transferase with UDP-GlcNAc

Lazarus, M.B., Jiang, J., Gloster, T.M., Zandberg, W.F., Vocadlo, D.J., Walker, S.

(2012) Nat Chem Biol 8: 966-968

Released	2012-10-31
Method	X-RAY DIFFRACTION 3.075 Å
Organisms	Homo sapiens
Macromolecule	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit (protein)
Unique Ligands	SO4, UD1

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4GZ6 \| pdb_00004gz6	Download File View File

Crystal structure of human O-GlcNAc Transferase with UDP-5SGlcNAc

Lazarus, M.B., Jiang, J., Gloster, T.M., Zandberg, W.F., Vocadlo, D.J., Walker, S.

(2012) Nat Chem Biol 8: 966-968

Released	2012-10-31
Method	X-RAY DIFFRACTION 2.98 Å
Organisms	Homo sapiens
Macromolecule	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit (protein)
Unique Ligands	12V, SO4

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4N39 \| pdb_00004n39	Download File View File

Crystal structure of human O-GlcNAc transferase bound to a peptide from HCF-1 pro-repeat 2 (11-26)

Lazarus, M.B., Herr, W., Walker, S.

(2013) Science 342: 1235-1239

Released	2014-01-01
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Homo sapiens
Macromolecule	Host cell factor 1 (protein) UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit (protein)
Unique Ligands	UDP

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4N3A \| pdb_00004n3a	Download File View File

Crystal Structure of human O-GlcNAc transferase bound to a peptide from HCF-1 pro-repeat 2 (1-26)E10A

Lazarus, M.B., Herr, W., Walker, S.

(2013) Science 342: 1235-1239

Released	2014-01-01
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Homo sapiens
Macromolecule	Host cell factor 1 (protein) UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit (protein)
Unique Ligands	UDP

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4N3B \| pdb_00004n3b	Download File View File

Crystal Structure of human O-GlcNAc Transferase bound to a peptide from HCF-1 pro-repeat2(1-26)E10Q and UDP-5SGlcNAc

Lazarus, M.B., Herr, W., Walker, S.

(2013) Science 342: 1235-1239

Released	2014-01-01
Method	X-RAY DIFFRACTION 2.17 Å
Organisms	Homo sapiens
Macromolecule	Host cell factor 1 (protein) UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit (protein)
Unique Ligands	12V

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4N3C \| pdb_00004n3c	Download File View File

Crystal Structure of human O-GlcNAc Transferase bound to a peptide from HCF-1 pro-repeat2(1-26) and UDP-GlcNAc

Lazarus, M.B., Herr, W., Walker, S.

(2013) Science 342: 1235-1239

Released	2014-01-01
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Homo sapiens
Macromolecule	Host cell factor 1 (protein) UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit (protein)
Unique Ligands	UD1

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4P31 \| pdb_00004p31	Download File View File

Crystal structure of a selenomethionine derivative of E. coli LptB in complex with ADP-Magensium

Sherman, D.J., Lazarus, M.B., Murphy, L., Liu, C., Walker, S., Ruiz, N., Kahne, D.

(2014) Proc Natl Acad Sci U S A 111: 4982-4987

Released	2014-03-26
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Escherichia coli K-12
Macromolecule	Lipopolysaccharide export system ATP-binding protein LptB (protein)
Unique Ligands	ADP, MG

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4P32 \| pdb_00004p32	Download File View File

Crystal structure of E. coli LptB in complex with ADP-magnesium

Sherman, D.J., Lazarus, M.B., Murphy, L., Liu, C., Walker, S., Ruiz, N., Kahne, D.

(2014) Proc Natl Acad Sci U S A 111: 4982-4987

Released	2014-03-26
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Escherichia coli K-12
Macromolecule	Lipopolysaccharide export system ATP-binding protein LptB (protein)
Unique Ligands	ADP, MG

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4P33 \| pdb_00004p33	Download File View File

Crystal structure of E. coli LptB-E163Q in complex with ATP-sodium

Sherman, D.J., Lazarus, M.B., Murphy, L., Liu, C., Walker, S., Ruiz, N., Kahne, D.

(2014) Proc Natl Acad Sci U S A 111: 4982-4987

Released	2014-03-26
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Escherichia coli K-12
Macromolecule	Lipopolysaccharide export system ATP-binding protein LptB (protein)
Unique Ligands	ATP, GOL, NA

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4WNO \| pdb_00004wno	Download File View File

Structure of ULK1 bound to an inhibitor

Lazarus, M.B., Novotny, C.J., Shokat, K.M.

(2015) ACS Chem Biol 10: 257-261

Released	2015-01-14
Method	X-RAY DIFFRACTION 1.56 Å
Organisms	Homo sapiens
Macromolecule	Serine/threonine-protein kinase ULK1 (protein)
Unique Ligands	3RF

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4WNP \| pdb_00004wnp	Download File View File

Structure of ULK1 bound to a potent inhibitor

Lazarus, M.B., Novotny, C.J., Shokat, K.M.

(2015) ACS Chem Biol 10: 257-261

Released	2015-01-14
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Homo sapiens
Macromolecule	Serine/threonine-protein kinase ULK1 (protein)
Unique Ligands	3RJ, GOL

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5CI7 \| pdb_00005ci7	Download File View File

Structure of ULK1 bound to a selective inhibitor

Lazarus, M.B., Shokat, K.M.

(2015) Bioorg Med Chem 23: 5483-5488

Released	2015-08-26
Method	X-RAY DIFFRACTION 1.74 Å
Organisms	Homo sapiens
Macromolecule	Serine/threonine-protein kinase ULK1 (protein)
Unique Ligands	51W, GOL

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5HGV \| pdb_00005hgv	Download File View File

Structure of an O-GlcNAc transferase point mutant, D554N in complex with peptide

Janetzko, J., Lazarus, M.B., Walker, S.

(2016) Nat Chem Biol 12: 899-901

Released	2016-09-14
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens
Macromolecule	TYR-PRO-GLY-GLY-SER-THR-PRO-VAL-SER-SER-ALA-ASN-MET-MET (protein) UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit (protein)
Unique Ligands	NAG, SO4, UDP

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6B89 \| pdb_00006b89	Download File View File

E. coli LptB in complex with ADP and novobiocin

May, J.M., Lazarus, M.B., Sherman, D.J., Owens, T.W., Mandler, M.D., Kahne, D.K.

(2017) J Am Chem Soc 139: 17221-17224

Released	2017-12-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli K-12
Macromolecule	Lipopolysaccharide export system ATP-binding protein LptB (protein)
Unique Ligands	ADP, MG, NOV

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6B8B \| pdb_00006b8b	Download File View File

E. coli LptB in complex with ADP and a novobiocin derivative

Mandler, M.D., Owens, T.W., Lazarus, M.B., May, J.M., Kahne, D.K.

(2017) J Am Chem Soc 139: 17221-17224

Released	2017-12-06
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Escherichia coli K-12
Macromolecule	Lipopolysaccharide export system ATP-binding protein LptB (protein)
Unique Ligands	ADP, CZJ, MG

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6MA1 \| pdb_00006ma1	Download File View File

Crystal structure of human O-GlcNAc transferase bound to a peptide from HCF-1 pro-repeat 2 (11-26) and inhibitor 4a

Martin, S.E.S., Lazarus, M.B., Walker, S.

(2018) J Am Chem Soc 140: 13542-13545

Released	2018-10-17
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Homo sapiens
Macromolecule	Host Cell Factor 1 peptide (protein) UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit (protein)
Unique Ligands	JA4

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6MA2 \| pdb_00006ma2	Download File View File

Crystal structure of human O-GlcNAc transferase bound to a peptide from HCF-1 pro-repeat 2 (11-26) and inhibitor ent-1a

Martin, S.E.S., Lazarus, M.B., Walker, S.

(2018) J Am Chem Soc 140: 13542-13545

Released	2018-10-17
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Host Cell Factor 1 peptide (protein) UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit (protein)
Unique Ligands	J9S

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6MA3 \| pdb_00006ma3	Download File View File

Crystal structure of human O-GlcNAc transferase bound to a peptide from HCF-1 pro-repeat 2 (11-26) and inhibitor 2a

Martin, S.E.S., Lazarus, M.B., Walker, S.

(2018) J Am Chem Soc 140: 13542-13545

Released	2018-10-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Host Cell Factor 1 peptide (protein) UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit (protein)
Unique Ligands	JAJ

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6MA4 \| pdb_00006ma4	Download File View File

Crystal structure of human O-GlcNAc transferase bound to a peptide from HCF-1 pro-repeat 2 (11-26) and inhibitor 3a

Martin, S.E.S., Lazarus, M.B., Walker, S.

(2018) J Am Chem Soc 140: 13542-13545

Released	2018-10-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Host Cell Factor 1 peptide (protein) UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit (protein)
Unique Ligands	JA7

1 to 25 of 36 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3PE3 | pdb_00003pe3

3PE4 | pdb_00003pe4

3TAX | pdb_00003tax

4GYW | pdb_00004gyw

4GYY | pdb_00004gyy

4GZ3 | pdb_00004gz3

4GZ5 | pdb_00004gz5

4GZ6 | pdb_00004gz6

4N39 | pdb_00004n39

4N3A | pdb_00004n3a

4N3B | pdb_00004n3b

4N3C | pdb_00004n3c

4P31 | pdb_00004p31

4P32 | pdb_00004p32

4P33 | pdb_00004p33

4WNO | pdb_00004wno

4WNP | pdb_00004wnp

5CI7 | pdb_00005ci7

5HGV | pdb_00005hgv

6B89 | pdb_00006b89

6B8B | pdb_00006b8b

6MA1 | pdb_00006ma1

6MA2 | pdb_00006ma2

6MA3 | pdb_00006ma3

6MA4 | pdb_00006ma4