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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Kapoor, T.M."

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Search Summary

This query matches 43 Structures.

Refinements

Structure Determination Methodology

experimental (43)

Scientific Name of Source Organism

	Homo sapiens (27)
	Drosophila melanogaster (7)
	Saccharomyces cerevisiae (4)
	Tequatrovirus T4 (4)
	Schizosaccharomyces pombe (3)
	Gallus gallus (2)
	Sus scrofa (1)

Taxonomy

	Eukaryota (43)
	Duplodnaviria (4)

Experimental Method

	ELECTRON MICROSCOPY (28)
	X-RAY DIFFRACTION (13)
	SOLUTION NMR (2)

Polymer Entity Type

Protein (43)

Refinement Resolution (Å)

	1.5 - 2.0 (3)
	2.0 - 2.5 (6)
	2.5 - 3.0 (3)
	3.0 - 3.5 (3)
	3.5 - 4.0 (14)
	4.0 - 4.5 (3)
	> 4.5 (9)

Release Date

	1995 - 1999 (2)
	2010 - 2014 (4)
	2015 - 2019 (15)
	2020 - 2024 (20)
	2025 - 2029 (2)

Enzyme Classification Name

	Hydrolases (20)
	Isomerases (7)
	Transferases (2)

Symmetry Type

	Asymmetric (37)
	Cyclic (4)
	Dihedral (1)
	Helical (1)

SCOP Classification

	Alpha and beta proteins (a/b) (7)
	All beta proteins (2)

AllSelected

1 to 25 of 43 Structures

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1NLO \| pdb_00001nlo	Download File View File

STRUCTURE OF SIGNAL TRANSDUCTION PROTEIN, NMR, MINIMIZED AVERAGE STRUCTURE

Feng, S., Kapoor, T.M., Shirai, F., Combs, A.P., Schreiber, S.L.

(1996) Chem Biol 3: 661-670

Released	1997-01-27
Method	SOLUTION NMR
Organisms	Gallus gallus
Macromolecule	C-SRC (protein) NL1 (MN7-MN2-MN1-PLPPLP) (protein)

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1NLP \| pdb_00001nlp	Download File View File

STRUCTURE OF SIGNAL TRANSDUCTION PROTEIN, NMR, MINIMIZED AVERAGE STRUCTURE

Feng, S., Kapoor, T.M., Shirai, F., Combs, A.P., Schreiber, S.L.

(1996) Chem Biol 3: 661-670

Released	1997-01-27
Method	SOLUTION NMR
Organisms	Gallus gallus
Macromolecule	C-SRC (protein) NL2 (MN8-MN1-PLPPLP) (protein)

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3NRX \| pdb_00003nrx	Download File View File

Insights into anti-parallel microtubule crosslinking by PRC1, a conserved non-motor microtubule binding protein

Kapoor, T.M., Subramanian, R., Wilson-Kubalek, E.M., Arthur, C.P., Bick, M.J., Campbell, E.A., Darst, S.A., Milligan, R.A.

(2010) Cell 142: 433-443

Released	2010-08-18
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	Protein regulator of cytokinesis 1 (protein)

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3NRY \| pdb_00003nry	Download File View File

Insights into anti-parallel microtubule crosslinking by PRC1, a conserved microtubule binding protein

Kapoor, T.M., Subramanian, R., Wilson-Kubalek, E.M., Arthur, C.P., Bick, M.J., Campbell, E.A., Darst, S.A., Milligan, R.A.

(2010) Cell 142: 433-443

Released	2010-08-25
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Protein regulator of cytokinesis 1 (protein)

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4L3I \| pdb_00004l3i	Download File View File

Structure of the microtubule associated protein PRC1 (Protein Regulator of Cytokinesis 1)

Subramanian, R., Ti, S., Tan, L., Darst, S.A., Kapoor, T.M.

(2013) Cell 154: 377-390

Released	2013-07-17
Method	X-RAY DIFFRACTION 3.6005 Å
Organisms	Homo sapiens
Macromolecule	Protein regulator of cytokinesis 1 (protein)

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4L6Y \| pdb_00004l6y	Download File View File

Structure of the microtubule associated protein PRC1 (Protein Regulator of Cytokinesis 1)

Subramanian, R., Ti, S., Tan, L., Darst, S.A., Kapoor, T.M.

(2013) Cell 154: 377-390

Released	2013-07-17
Method	X-RAY DIFFRACTION 3.3015 Å
Organisms	Homo sapiens
Macromolecule	Protein regulator of cytokinesis 1 (protein)

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5IJ0 \| pdb_00005ij0	Download File View File

Cryo EM density of microtubule assembled from human TUBB3

Ti, S.-C., Pamula, M.C., Howes, S.C., Duellberg, C., Nicholas, C.I., Kleiner, R.E., Forth, S., Surrey, T., Nogales, E., Kapoor, T.M.

(2016) Dev Cell 37: 72-84

Released	2016-04-20
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Homo sapiens
Macromolecule	Tubulin alpha-1B chain (protein) Tubulin beta-3 chain (protein)
Unique Ligands	GDP, GTP, MG

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5IJ9 \| pdb_00005ij9	Download File View File

Cryo EM density of microtubule assembled from human TUBB3-D417H mutant

Ti, S.C., Pamula, M.C., Howes, S.C., Duellberg, C., Cade, N.I., Kleiner, R.E., Forth, S., Surrey, T., Nogales, E., Kapoor, T.M.

(2016) Dev Cell 37: 72-84

Released	2016-04-20
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Homo sapiens
Macromolecule	Tubulin alpha-1B chain (protein) Tubulin beta-3 chain (protein)
Unique Ligands	GDP, GTP, MG

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5KMG \| pdb_00005kmg	Download File View File

Near-atomic cryo-EM structure of PRC1 bound to the microtubule

Kellogg, E.H., Howes, S., Ti, S.-C., Ramirez-Aportela, E., Kapoor, T.M., Chacon, P., Nogales, E.

(2016) Proc Natl Acad Sci U S A 113: 9430-9439

Released	2016-08-03
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Homo sapiens Sus scrofa
Macromolecule	Protein regulator of cytokinesis 1 (protein) Tubulin alpha-1B chain (protein) Tubulin beta chain (protein)
Unique Ligands	GDP, GTP, MG, POU

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6E7B \| pdb_00006e7b	Download File View File

13-pf 3-start GMPCPP-human alpha1B/beta3 microtubules

Ti, S.C., Alushin, G.M., Kapoor, T.M.

(2018) Dev Cell 47: 175

Released	2018-10-10
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Homo sapiens
Macromolecule	Tubulin alpha-1B chain (protein) Tubulin beta-3 chain (protein)
Unique Ligands	G2P, GTP, MG

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6E7C \| pdb_00006e7c	Download File View File

14-pf 3-start GMPCPP-human alpha1B/beta2B microtubules

Ti, S.C., Alushin, G.M., Kapoor, T.M.

(2018) Dev Cell 47: 175

Released	2018-10-10
Method	ELECTRON MICROSCOPY 3.65 Å
Organisms	Homo sapiens
Macromolecule	Tubulin alpha-1B chain (protein) Tubulin beta-2B chain (protein)
Unique Ligands	G2P, GTP, MG

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6NYV \| pdb_00006nyv	Download File View File

Structure of spastin AAA domain in complex with a quinazoline-based inhibitor

Pisa, R., Cupido, T., Kapoor, T.M.

(2019) J Am Chem Soc 141: 5602-5606

Released	2019-03-27
Method	X-RAY DIFFRACTION 2.425 Å
Organisms	Drosophila melanogaster
Macromolecule	Spastin (protein)
Unique Ligands	LBD, MPD, SO4

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6NYW \| pdb_00006nyw	Download File View File

Structure of spastin AAA domain N527C mutant in complex with 8-fluoroquinazoline-based inhibitor

Pisa, R., Cupido, T., Kapoor, T.M.

(2019) J Am Chem Soc 141: 5602-5606

Released	2019-03-27
Method	X-RAY DIFFRACTION 2.189 Å
Organisms	Drosophila melanogaster
Macromolecule	Spastin (protein)
Unique Ligands	ACT, L8M, MPD, SO4

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6OR5 \| pdb_00006or5	Download File View File

Full-length S. pombe Mdn1 in the presence of AMPPNP (ring region)

Chen, Z., Suzuki, H., Wang, A.C., DiMaio, F., Walz, T., Kapoor, T.M.

(2018) Cell 175: 822-834.e18

Released	2019-05-29
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Schizosaccharomyces pombe
Macromolecule	Midasin (protein)
Unique Ligands	ANP

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6OR6 \| pdb_00006or6	Download File View File

Full-length S. pombe Mdn1 in the presence of AMPPNP (tail region)

Chen, Z., Suzuki, H., Wang, A.C., DiMaio, F., Walz, T., Kapoor, T.M.

(2018) Cell 175: 822-834.e18

Released	2019-05-29
Method	ELECTRON MICROSCOPY 5.3 Å
Organisms	Schizosaccharomyces pombe
Macromolecule	Midasin (protein)

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6ORB \| pdb_00006orb	Download File View File

Full-length S. pombe Mdn1 in the presence of ATP and Rbin-1

Chen, Z., Suzuki, H., Wang, A.C., DiMaio, F., Walz, T., Kapoor, T.M.

(2018) Cell 175: 822-834.e18

Released	2019-05-29
Method	ELECTRON MICROSCOPY 7.7 Å
Organisms	Schizosaccharomyces pombe
Macromolecule	Midasin (protein)

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6P10 \| pdb_00006p10	Download File View File

Structure of spastin AAA domain (N527C mutant) in complex with JNJ-7706621 inhibitor

Pisa, R., Cupido, T., Kapoor, T.M.

(2019) Cell Chem Biol 26: 1263

Released	2019-07-24
Method	X-RAY DIFFRACTION 2.301 Å
Organisms	Drosophila melanogaster
Macromolecule	Drosophila melanogaster Spastin AAA domain (protein)
Unique Ligands	MPD, SKE, SO4

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6P11 \| pdb_00006p11	Download File View File

Structure of spastin AAA domain (T692A mutant) in complex with JNJ-7706621 inhibitor

Pisa, R., Cupido, T., Kapoor, T.M.

(2019) Cell Chem Biol 26: 1263

Released	2019-07-24
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Drosophila melanogaster
Macromolecule	Drosophila melanogaster Spastin AAA domain (protein)
Unique Ligands	MPD, SKE, SO4

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6P12 \| pdb_00006p12	Download File View File

Structure of spastin AAA domain (wild-type) in complex with diaminotriazole-based inhibitor

Pisa, R., Cupido, T., Kapoor, T.M.

(2019) Cell Chem Biol 26: 1263

Released	2019-07-24
Method	X-RAY DIFFRACTION 1.9413185678 Å
Organisms	Drosophila melanogaster
Macromolecule	Drosophila melanogaster Spastin AAA domain (protein)
Unique Ligands	MPD, NKY, SO4

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6P13 \| pdb_00006p13	Download File View File

Structure of spastin AAA domain (T692A mutant) in complex with a diaminotriazole-based inhibitor (crystal form A)

Pisa, R., Cupido, T., Kapoor, T.M.

(2019) Cell Chem Biol 26: 1263

Released	2019-08-07
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Drosophila melanogaster
Macromolecule	Spastin (protein)
Unique Ligands	MPD, NKY, SO4

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6P14 \| pdb_00006p14	Download File View File

Structure of spastin AAA domain (T692A mutant) in complex with a diaminotriazole-based inhibitor (crystal form B)

Pisa, R., Cupido, T., Kapoor, T.M.

(2019) Cell Chem Biol 26: 1263

Released	2019-07-24
Method	X-RAY DIFFRACTION 1.93001125684 Å
Organisms	Drosophila melanogaster
Macromolecule	Spastin (protein)
Unique Ligands	ACT, MPD, NKY, SO4

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6V5V \| pdb_00006v5v	Download File View File

Structure of gamma-tubulin in the native human gamma-tubulin ring complex

Wieczorek, M., Urnavicius, L., Ti, S., Molloy, K.R., Chait, B.T., Kapoor, T.M.

(2020) Cell 180: 165-175.e16

Released	2020-01-01
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Homo sapiens
Macromolecule	Tubulin gamma-1 chain (protein)
Unique Ligands	GDP

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6V69 \| pdb_00006v69	Download File View File

Structures of GCP4 and GCP5 in the native human gamma-tubulin ring complex

Wieczorek, M., Urnavicius, L., Ti, S., Molloy, K.R., Chait, B.T., Kapoor, T.M.

(2020) Cell 180: 165-175.e16

Released	2020-01-01
Method	ELECTRON MICROSCOPY 4.2 Å
Organisms	Homo sapiens
Macromolecule	Gamma-tubulin complex component 4 (protein) Gamma-tubulin complex component 5 (protein)

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6V6B \| pdb_00006v6b	Download File View File

Structures of GCP2 and GCP3 in the native human gamma-tubulin ring complex

Wieczorek, M., Urnavicius, L., Ti, S., Molloy, K.R., Chait, B.T., Kapoor, T.M.

(2020) Cell 180: 165-175.e16

Released	2020-01-01
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Homo sapiens
Macromolecule	Gamma-tubulin complex component 2 (protein) Gamma-tubulin complex component 3 (protein)