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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Jungnickel, K."

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Search Summary

This query matches 14 Structures.

Refinements

Structure Determination Methodology

experimental (14)

Scientific Name of Source Organism

	Escherichia coli (14)
	Lama glama (14)

Taxonomy

	Bacteria (14)
	Eukaryota (14)

Experimental Method

X-RAY DIFFRACTION (14)

Polymer Entity Type

Protein (14)

Refinement Resolution (Å)

	2.0 - 2.5 (6)
	2.5 - 3.0 (8)

Release Date

2020 - 2024 (14)

Membrane Protein Annotation

	PDBTM (14)
	mpstruc (14)
	MemProtMD (7)

Symmetry Type

Asymmetric (14)

AllSelected

1 to 14 of 14 Structures

Page 1 of 1

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8B17 \| pdb_00008b17	Download File View File

DtpB-Nb132-AWA

Killer, M., Finocchio, G., Lei, J., Jungnickel, K., Kotov, V., Steinke, J., Bartels, K., Strauss, J., Dupeux, F., Humm, A.S., Cornaciu, I., Marquez, J., Pardon, E., Steyeart, J., Loew, C.

(2023) Cell Rep 42: 112831-112831

Released	2023-08-09
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli Lama glama
Macromolecule	ALA-TRP-ALA (protein) Dipeptide and tripeptide permease B (protein) Nanobody 132 (protein)
Unique Ligands	1PE, D10, D12, GOL, HEX, LMT, OCT, PG4

Explore in 3D

8B18 \| pdb_00008b18	Download File View File

DtpB-Nb132-AF

Killer, M., Finocchio, G., Lei, J., Jungnickel, K., Kotov, V., Steinke, J., Bartels, K., Strauss, J., Dupeux, F., Humm, A.S., Cornaciu, I., Marquez, J., Pardon, E., Steyeart, J., Loew, C.

(2023) Cell Rep 42: 112831-112831

Released	2023-08-09
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli Lama glama
Macromolecule	ALA-PHE (protein) Dipeptide and tripeptide permease B (protein) Nanobody 132 (protein)
Unique Ligands	1PE, D10, D12, GOL, HEX, LMT, OCT, PG4

Explore in 3D

8B19 \| pdb_00008b19	Download File View File

DtpB-Nb132-AFA

Killer, M., Finocchio, G., Lei, J., Jungnickel, K., Kotov, V., Steinke, J., Bartels, K., Strauss, J., Dupeux, F., Humm, A.S., Cornaciu, I., Marquez, J., Pardon, E., Steyeart, J., Loew, C.

(2023) Cell Rep 42: 112831-112831

Released	2023-08-09
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Escherichia coli Lama glama
Macromolecule	ALA-PHE-ALA (protein) Dipeptide and tripeptide permease B (protein) Nanobody 132 (protein)
Unique Ligands	1PE, D10, D12, GOL, HEX, LMT, OCT, PG4

Explore in 3D

8B1A \| pdb_00008b1a	Download File View File

DtpB-Nb132-AI

Killer, M., Finocchio, G., Lei, J., Jungnickel, K., Kotov, V., Steinke, J., Bartels, K., Strauss, J., Dupeux, F., Humm, A.S., Cornaciu, I., Marquez, J., Pardon, E., Steyeart, J., Loew, C.

(2023) Cell Rep 42: 112831-112831

Released	2023-08-09
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Escherichia coli Lama glama
Macromolecule	ALA-ILE (protein) Dipeptide and tripeptide permease B (protein) Nanobody 132 (protein)
Unique Ligands	1PE, D10, D12, GOL, HEX, LMT, OCT, PG4

Explore in 3D

8B1B \| pdb_00008b1b	Download File View File

DtpB-Nb132-AL

Killer, M., Finocchio, G., Lei, J., Jungnickel, K., Kotov, V., Steinke, J., Bartels, K., Strauss, J., Dupeux, F., Humm, A.S., Cornaciu, I., Marquez, J., Pardon, E., Steyeart, J., Loew, C.

(2023) Cell Rep 42: 112831-112831

Released	2023-08-09
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli Lama glama
Macromolecule	ALA-LEU (protein) Dipeptide and tripeptide permease B (protein) Nanobody 132 (protein)
Unique Ligands	1PE, D10, D12, GOL, HEX, LMT, OCT, PG4

Explore in 3D

8B1C \| pdb_00008b1c	Download File View File

DtpB-Nb132-ALA

Killer, M., Finocchio, G., Lei, J., Jungnickel, K., Kotov, V., Steinke, J., Bartels, K., Strauss, J., Dupeux, F., Humm, A.S., Cornaciu, I., Marquez, J., Pardon, E., Steyeart, J., Loew, C.

(2023) Cell Rep 42: 112831-112831

Released	2023-08-09
Method	X-RAY DIFFRACTION 2.56 Å
Organisms	Escherichia coli Lama glama
Macromolecule	ALA-LEU-ALA (protein) Dipeptide and tripeptide permease B (protein) Nanobody 132 (protein)
Unique Ligands	1PE, D10, D12, GOL, HEX, LMT, OCT, PG4

Explore in 3D

8B1D \| pdb_00008b1d	Download File View File

DtpB-Nb132-APF

Killer, M., Finocchio, G., Lei, J., Jungnickel, K., Kotov, V., Steinke, J., Bartels, K., Strauss, J., Dupeux, F., Humm, A.S., Cornaciu, I., Marquez, J., Pardon, E., Steyeart, J., Loew, C.

(2023) Cell Rep 42: 112831-112831

Released	2023-08-09
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli Lama glama
Macromolecule	ALA-PRO-PHE (protein) Dipeptide and tripeptide permease B (protein) Nanobody 132 (protein)
Unique Ligands	1PE, D10, D12, GOL, HEX, LMT, OCT, PG4

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8B1E \| pdb_00008b1e	Download File View File

DtpB-Nb132-AQ

Killer, M., Finocchio, G., Lei, J., Jungnickel, K., Kotov, V., Steinke, J., Bartels, K., Strauss, J., Dupeux, F., Humm, A.S., Cornaciu, I., Marquez, J., Pardon, E., Steyeart, J., Loew, C.

(2023) Cell Rep 42: 112831-112831

Released	2023-08-09
Method	X-RAY DIFFRACTION 2.47 Å
Organisms	Escherichia coli Lama glama
Macromolecule	ALA-GLN (protein) Dipeptide and tripeptide permease B (protein) Nanobody 132 (protein)
Unique Ligands	1PE, D10, D12, GOL, HEX, LMT, OCT, PG4

Explore in 3D

8B1F \| pdb_00008b1f	Download File View File

DtpB-Nb132-AV

Killer, M., Finocchio, G., Lei, J., Jungnickel, K., Kotov, V., Steinke, J., Bartels, K., Strauss, J., Dupeux, F., Humm, A.S., Cornaciu, I., Marquez, J., Pardon, E., Steyeart, J., Loew, C.

(2023) Cell Rep 42: 112831-112831

Released	2023-08-09
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Escherichia coli Lama glama
Macromolecule	ALA-VAL (protein) Dipeptide and tripeptide permease B (protein) Nanobody 132 (protein)
Unique Ligands	1PE, D10, D12, GOL, HEX, LMT, OCT, PG4

Explore in 3D

8B1G \| pdb_00008b1g	Download File View File

DtpB-Nb132-AW

Killer, M., Finocchio, G., Lei, J., Jungnickel, K., Kotov, V., Steinke, J., Bartels, K., Strauss, J., Dupeux, F., Humm, A.S., Cornaciu, I., Marquez, J., Pardon, E., Steyeart, J., Loew, C.

(2023) Cell Rep 42: 112831-112831

Released	2023-08-09
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli Lama glama
Macromolecule	ALA-TRP (protein) Dipeptide and tripeptide permease B (protein) Nanobody 132 (protein)
Unique Ligands	1PE, D10, D12, GOL, HEX, LMT, OCT, PG4

Explore in 3D

8B1H \| pdb_00008b1h	Download File View File

DtpB-Nb132-KV

Killer, M., Finocchio, G., Lei, J., Jungnickel, K., Kotov, V., Steinke, J., Bartels, K., Strauss, J., Dupeux, F., Humm, A.S., Cornaciu, I., Marquez, J., Pardon, E., Steyeart, J., Loew, C.

(2023) Cell Rep 42: 112831-112831

Released	2023-08-09
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli Lama glama
Macromolecule	Dipeptide and tripeptide permease B (protein) LYS-VAL (protein) Nanobody 132 (protein)
Unique Ligands	1PE, D10, D12, GOL, HEX, LMT, OCT, PG4

Explore in 3D

8B1I \| pdb_00008b1i	Download File View File

DtpB-Nb132-MS

Killer, M., Finocchio, G., Lei, J., Jungnickel, K., Kotov, V., Steinke, J., Bartels, K., Strauss, J., Dupeux, F., Humm, A.S., Cornaciu, I., Marquez, J., Pardon, E., Steyeart, J., Loew, C.

(2023) Cell Rep 42: 112831-112831

Released	2023-08-09
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Escherichia coli Lama glama
Macromolecule	Dipeptide and tripeptide permease B (protein) MET-SER (protein) Nanobody 132 (protein)
Unique Ligands	1PE, D10, D12, GOL, HEX, LMT, OCT, PG4

Explore in 3D

8B1J \| pdb_00008b1j	Download File View File

DtpB-Nb132-SL

Killer, M., Finocchio, G., Lei, J., Jungnickel, K., Kotov, V., Steinke, J., Bartels, K., Strauss, J., Dupeux, F., Humm, A.S., Cornaciu, I., Marquez, J., Pardon, E., Steyeart, J., Loew, C.

(2023) Cell Rep 42: 112831-112831

Released	2023-08-09
Method	X-RAY DIFFRACTION 2.67 Å
Organisms	Escherichia coli Lama glama
Macromolecule	Dipeptide and tripeptide permease B (protein) Nanobody 132 (protein) SER-LEU (protein)
Unique Ligands	1PE, D10, D12, GOL, HEX, LMT, OCT, PG4

Explore in 3D

8B1K \| pdb_00008b1k	Download File View File

DtpB-Nb132-NV

Killer, M., Finocchio, G., Lei, J., Jungnickel, K., Kotov, V., Steinke, J., Bartels, K., Strauss, J., Dupeux, F., Humm, A.S., Cornaciu, I., Marquez, J., Pardon, E., Steyeart, J., Loew, C.

(2023) Cell Rep 42: 112831-112831

Released	2023-08-09
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli Lama glama
Macromolecule	ASN-VAL (protein) Dipeptide and tripeptide permease B (protein) Nanobody 132 (protein)
Unique Ligands	1PE, D10, D12, GOL, HEX, LMT, OCT, PG4

1 to 14 of 14 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

8B17 | pdb_00008b17

DtpB-Nb132-AWA

8B18 | pdb_00008b18

DtpB-Nb132-AF

8B19 | pdb_00008b19

DtpB-Nb132-AFA

8B1A | pdb_00008b1a

DtpB-Nb132-AI

8B1B | pdb_00008b1b

DtpB-Nb132-AL

8B1C | pdb_00008b1c

DtpB-Nb132-ALA

8B1D | pdb_00008b1d

DtpB-Nb132-APF

8B1E | pdb_00008b1e

DtpB-Nb132-AQ

8B1F | pdb_00008b1f

DtpB-Nb132-AV

8B1G | pdb_00008b1g

DtpB-Nb132-AW

8B1H | pdb_00008b1h

DtpB-Nb132-KV

8B1I | pdb_00008b1i

DtpB-Nb132-MS

8B1J | pdb_00008b1j

DtpB-Nb132-SL

8B1K | pdb_00008b1k

DtpB-Nb132-NV

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Membrane Protein Annotation

Symmetry Type

8B17 | pdb_00008b17

8B18 | pdb_00008b18

8B19 | pdb_00008b19

8B1A | pdb_00008b1a

8B1B | pdb_00008b1b

8B1C | pdb_00008b1c

8B1D | pdb_00008b1d

8B1E | pdb_00008b1e

8B1F | pdb_00008b1f

8B1G | pdb_00008b1g

8B1H | pdb_00008b1h

8B1I | pdb_00008b1i

8B1J | pdb_00008b1j

8B1K | pdb_00008b1k