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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Fujiyoshi, Y."

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Search Summary

This query matches 84 Structures.

Refinements

Structure Determination Methodology

experimental (84)

Scientific Name of Source Organism

	Homo sapiens (27)
	synthetic construct (20)
	Mus musculus (13)
	Escherichia coli (11)
	Severe acute respiratory syndrome coronavirus 2 (11)
	Rattus norvegicus (10)
	Sus scrofa (8)
	Caenorhabditis elegans (5)
	Clostridium perfringens (4)
	Aliarcobacter butzleri (3)

More...

Taxonomy

	Eukaryota (61)
	Bacteria (23)
	other sequences (20)
	Riboviria (13)
	Archaea (2)
	Duplodnaviria (2)

Experimental Method

	ELECTRON MICROSCOPY (41)
	X-RAY DIFFRACTION (27)
	ELECTRON CRYSTALLOGRAPHY (16)

Polymer Entity Type

	Protein (84)
	RNA (2)

Refinement Resolution (Å)

	1.5 - 2.0 (5)
	2.0 - 2.5 (10)
	2.5 - 3.0 (15)
	3.0 - 3.5 (21)
	3.5 - 4.0 (15)
	4.0 - 4.5 (2)
	> 4.5 (16)

Release Date

	1995 - 1999 (2)
	2000 - 2004 (4)
	2005 - 2009 (6)
	2010 - 2014 (12)
	2015 - 2019 (18)
	2020 - 2024 (19)
	2025 - 2029 (23)

Enzyme Classification Name

	Hydrolases (19)
	Translocases (8)
	Oxidoreductases (1)

Membrane Protein Annotation

	PDBTM (54)
	MemProtMD (44)
	mpstruc (37)
	OPM (29)

Symmetry Type

	Asymmetric (45)
	Cyclic (34)
	Dihedral (6)

SCOP Classification

	Membrane and cell surface proteins and peptides (11)
	Alpha and beta proteins (a/b) (1)
	All beta proteins (2)
	Artifacts (3)

AllSelected

1 to 25 of 84 Structures

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1AT9 \| pdb_00001at9	Download File View File

STRUCTURE OF BACTERIORHODOPSIN AT 3.0 ANGSTROM DETERMINED BY ELECTRON CRYSTALLOGRAPHY

Kimura, Y., Vassylyev, D.G., Miyazawa, A., Kidera, A., Matsushima, M., Mitsuoka, K., Murata, K., Hirai, T., Fujiyoshi, Y.

(1997) Nature 389: 206-211

Released	1998-09-16
Method	ELECTRON CRYSTALLOGRAPHY 2.8 Å
Organisms	Halobacterium salinarum
Macromolecule	BACTERIORHODOPSIN (protein)
Unique Ligands	RET

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1FQY \| pdb_00001fqy	Download File View File

STRUCTURE OF AQUAPORIN-1 AT 3.8 A RESOLUTION BY ELECTRON CRYSTALLOGRAPHY

Murata, K., Mitsuoka, K., Hirai, T., Walz, T., Agre, P., Heymann, J.B., Engel, A., Fujiyoshi, Y.

(2000) Nature 407: 599-605

Released	2000-10-18
Method	ELECTRON CRYSTALLOGRAPHY 3.8 Å
Organisms	Homo sapiens
Macromolecule	AQUAPORIN-1 (protein)

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1I2H \| pdb_00001i2h	Download File View File

CRYSTAL STRUCTURE ANALYSIS OF PSD-ZIP45(HOMER1C/VESL-1L)CONSERVED HOMER 1 DOMAIN

Irie, K., Nakatsu, T., Mitsuoka, K., Fujiyoshi, Y., Kato, H.

(2002) J Mol Biology 318: 1117-1126

Released	2002-05-29
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Rattus norvegicus
Macromolecule	PSD-ZIP45(HOMER-1C/VESL-1L) (protein)

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1L9H \| pdb_00001l9h	Download File View File

Crystal structure of bovine rhodopsin at 2.6 angstroms RESOLUTION

Okada, T., Fujiyoshi, Y., Silow, M., Navarro, J., Landau, E.M., Shichida, Y.

(2002) Proc Natl Acad Sci U S A 99: 5982-5987

Released	2002-05-15
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Bos taurus
Macromolecule	rhodopsin (protein)
Unique Ligands	BNG, HG, HTO, PLM, RET, ZN
Unique branched monosaccharides	MAN, NAG

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1OED \| pdb_00001oed	Download File View File

STRUCTURE OF ACETYLCHOLINE RECEPTOR PORE FROM ELECTRON IMAGES

Miyazawa, A., Fujiyoshi, Y., Unwin, N.

(2003) Nature 423: 949

Released	2003-06-26
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Torpedo marmorata
Macromolecule	Acetylcholine receptor beta subunit (protein) Acetylcholine receptor delta subunit (protein) Acetylcholine receptor gamma subunit (protein) Acetylcholine receptor subunit alpha (protein)

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2AT9 \| pdb_00002at9	Download File View File

STRUCTURE OF BACTERIORHODOPSIN AT 3.0 ANGSTROM BY ELECTRON CRYSTALLOGRAPHY

Mitsuoka, K., Hirai, T., Murata, K., Miyazawa, A., Kidera, A., Kimura, Y., Fujiyoshi, Y.

(1999) J Mol Biology 286: 861-882

Released	1999-04-27
Method	ELECTRON CRYSTALLOGRAPHY 3 Å
Organisms	Halobacterium salinarum
Macromolecule	BACTERIORHODOPSIN (protein)
Unique Ligands	2DP, RET

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2B6O \| pdb_00002b6o	Download File View File

Electron crystallographic structure of lens Aquaporin-0 (AQP0) (lens MIP) at 1.9A resolution, in a closed pore state

Gonen, T., Cheng, Y., Sliz, P., Hiroaki, Y., Fujiyoshi, Y., Harrison, S.C., Walz, T.

(2005) Nature 438: 633-638

Released	2005-12-06
Method	ELECTRON CRYSTALLOGRAPHY 1.9 Å
Organisms	Ovis aries
Macromolecule	Lens fiber major intrinsic protein (protein)
Unique Ligands	MC3

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2B6P \| pdb_00002b6p	Download File View File

X-ray structure of lens Aquaporin-0 (AQP0) (lens MIP) in an open pore state

Gonen, T., Cheng, Y., Sliz, P., Hiroaki, Y., Fujiyoshi, Y., Harrison, S.C., Walz, T.

(2005) Nature 438: 633-638

Released	2005-12-06
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Bos taurus
Macromolecule	Lens fiber major intrinsic protein (protein)

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2D57 \| pdb_00002d57	Download File View File

Double layered 2D crystal structure of AQUAPORIN-4 (AQP4M23) at 3.2 a resolution by electron crystallography

Hiroaki, Y., Tani, K., Kamegawa, A., Gyobu, N., Nishikawa, K., Suzuki, H., Walz, T., Sasaki, S., Mitsuoka, K., Kimura, K., Mizoguchi, A., Fujiyoshi, Y.

(2005) J Mol Biology 355: 628-639

Released	2006-01-31
Method	ELECTRON CRYSTALLOGRAPHY 3.2 Å
Organisms	Rattus norvegicus
Macromolecule	Aquaporin-4 (protein)

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2XZB \| pdb_00002xzb	Download File View File

Pig Gastric H,K-ATPase with bound BeF and SCH28080

Abe, K., Tani, K., Fujiyoshi, Y.

(2011) Nat Commun 2: 155

Released	2011-01-26
Method	ELECTRON CRYSTALLOGRAPHY 7 Å
Organisms	Sus scrofa
Macromolecule	POTASSIUM-TRANSPORTING ATPASE ALPHA CHAIN 1 (protein) POTASSIUM-TRANSPORTING ATPASE SUBUNIT BETA (protein)

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2YN9 \| pdb_00002yn9	Download File View File

Cryo-EM structure of gastric H+,K+-ATPase with bound rubidium

Abe, K., Tani, K., Friedrich, T., Fujiyoshi, Y.

(2012) Proc Natl Acad Sci U S A 109: 18401

Released	2012-11-07
Method	ELECTRON CRYSTALLOGRAPHY 8 Å
Organisms	Sus scrofa
Macromolecule	POTASSIUM-TRANSPORTING ATPASE ALPHA CHAIN 1 (protein) POTASSIUM-TRANSPORTING ATPASE SUBUNIT BETA (protein)

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2ZW3 \| pdb_00002zw3	Download File View File

Structure of the connexin-26 gap junction channel at 3.5 angstrom resolution

Maeda, S., Nakagawa, S., Suga, M., Yamashita, E., Oshima, A., Fujiyoshi, Y., Tsukihara, T.

(2009) Nature 458: 597-602

Released	2009-04-07
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Homo sapiens
Macromolecule	Gap junction beta-2 protein (protein)

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2ZZ9 \| pdb_00002zz9	Download File View File

Structure of aquaporin-4 S180D mutant at 2.8 A resolution by electron crystallography

Tani, K., Mitsuma, T., Hiroaki, Y., Kamegawa, A., Nishikawa, K., Tanimura, Y., Fujiyoshi, Y.

(2009) J Mol Biology 389: 694-706

Released	2009-06-09
Method	ELECTRON CRYSTALLOGRAPHY 2.8 Å
Organisms	Rattus norvegicus
Macromolecule	Aquaporin-4 (protein)
Unique Ligands	PEE

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3IXZ \| pdb_00003ixz	Download File View File

Pig gastric H+/K+-ATPase complexed with aluminium fluoride

Abe, K., Tani, K., Nishizawa, T., Fujiyoshi, Y.

(2009) EMBO J 28: 1637-1643

Released	2009-06-23
Method	ELECTRON CRYSTALLOGRAPHY
Organisms	Sus scrofa
Macromolecule	Potassium-transporting ATPase alpha (protein) Potassium-transporting ATPase subunit beta (protein)

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3IYZ \| pdb_00003iyz	Download File View File

Structure of Aquaporin-4 S180D mutant at 10.0 A resolution from electron micrograph

Mitsuma, T., Tani, K., Hiroaki, Y., Kamegawa, A., Suzuki, H., Hibino, H., Kurachi, Y., Fujiyoshi, Y.

(2010) J Mol Biology 402: 669-681

Released	2010-08-25
Method	ELECTRON CRYSTALLOGRAPHY 10 Å
Organisms	Rattus norvegicus
Macromolecule	Aquaporin-4 (protein)

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3IZ1 \| pdb_00003iz1	Download File View File

C-alpha model fitted into the EM structure of Cx26M34A

Oshima, A., Tani, K., Toloue, M.M., Hiroaki, Y., Smock, A., Inukai, S., Cone, A., Nicholson, B.J., Sosinsky, G.E., Fujiyoshi, Y.

(2011) J Mol Biology 405: 724-735

Released	2010-11-03
Method	ELECTRON CRYSTALLOGRAPHY
Organisms	Homo sapiens
Macromolecule	Gap junction beta-2 protein (protein)

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3IZ2 \| pdb_00003iz2	Download File View File

C-alpha model fitted into the EM structure of Cx26M34Adel2-7

Oshima, A., Tani, K., Toloue, M.M., Hiroaki, Y., Smock, A., Inukai, S., Cone, A., Nicholson, B.J., Sosinsky, G.E., Fujiyoshi, Y.

(2011) J Mol Biology 405: 724-735

Released	2010-11-03
Method	ELECTRON CRYSTALLOGRAPHY
Organisms	Homo sapiens
Macromolecule	Gap junction beta-2 protein (protein)

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3VOU \| pdb_00003vou	Download File View File

The crystal structure of NaK-NavSulP chimera channel

Irie, K., Shimomura, T., Fujiyoshi, Y.

(2012) Nat Commun 3: 793-793

Released	2012-05-02
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Bacillus mycoides KBAB4 Sulfitobacter sp. NAS-14.1
Macromolecule	Ion transport 2 domain protein, Voltage-gated sodium channel (protein)
Unique Ligands	CO, NA

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3X29 \| pdb_00003x29	Download File View File

CRYSTAL STRUCTURE of MOUSE CLAUDIN-19 IN COMPLEX with C-TERMINAL FRAGMENT OF CLOSTRIDIUM PERFRINGENS ENTEROTOXIN

Saitoh, Y., Suzuki, H., Tani, K., Nishikawa, K., Irie, K., Ogura, Y., Tamura, A., Tsukita, S., Fujiyoshi, Y.

(2015) Science 347: 775-778

Released	2015-01-21
Method	X-RAY DIFFRACTION 3.7 Å
Organisms	Clostridium perfringens Mus musculus
Macromolecule	Claudin-19 (protein) Heat-labile enterotoxin B chain (protein)

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4AQ5 \| pdb_00004aq5	Download File View File

Gating movement in acetylcholine receptor analysed by time-resolved electron cryo-microscopy (closed class)

Unwin, N., Fujiyoshi, Y.

(2012) J Mol Biology 422: 617

Released	2012-08-01
Method	ELECTRON MICROSCOPY 6.2 Å
Organisms	Torpedo marmorata
Macromolecule	ACETYLCHOLINE RECEPTOR BETA SUBUNIT (protein) ACETYLCHOLINE RECEPTOR DELTA SUBUNIT (protein) ACETYLCHOLINE RECEPTOR GAMMA SUBUNIT (protein) ACETYLCHOLINE RECEPTOR SUBUNIT ALPHA (protein)

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4AQ9 \| pdb_00004aq9	Download File View File

Gating movement in acetylcholine receptor analysed by time- resolved electron cryo-microscopy (open class)

Unwin, N., Fujiyoshi, Y.

(2012) J Mol Biology 422: 617

Released	2012-08-01
Method	ELECTRON MICROSCOPY 6.2 Å
Organisms	Torpedo marmorata
Macromolecule	ACETYLCHOLINE RECEPTOR BETA SUBUNIT (protein) ACETYLCHOLINE RECEPTOR DELTA SUBUNIT (protein) ACETYLCHOLINE RECEPTOR GAMMA SUBUNIT (protein) ACETYLCHOLINE RECEPTOR SUBUNIT ALPHA (protein)

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4BGN \| pdb_00004bgn	Download File View File

cryo-EM structure of the NavCt voltage-gated sodium channel

Tsai, C.J., Tani, K., Irie, K., Hiroaki, Y., Shimomura, T., Mcmillan, D.G., Cook, G.M., Schertler, G., Fujiyoshi, Y., Li, X.D.

(2013) J Mol Biology 425: 4074

Released	2013-07-10
Method	ELECTRON CRYSTALLOGRAPHY 9 Å
Organisms	Caldalkalibacillus thermarum
Macromolecule	VOLTAGE-GATED SODIUM CHANNEL (protein)

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4P79 \| pdb_00004p79	Download File View File

Crystal structure of mouse claudin-15

Suzuki, H., Nishizawa, T., Tani, K., Yamazaki, Y., Tamura, A., Ishitani, R., Dohmae, N., Tsukita, S., Nureki, O., Fujiyoshi, Y.

(2014) Science 344: 304-307

Released	2014-04-30
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Mus musculus
Macromolecule	Claudin-15 (protein)
Unique Ligands	OLC

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4UX1 \| pdb_00004ux1	Download File View File

Cryo-EM structure of antagonist-bound E2P gastric H,K-ATPase (SCH.E2. AlF)

Abe, K., Tani, K., Fujiyoshi, Y.

(2014) J Biological Chem 289: 30590

Released	2014-09-17
Method	ELECTRON CRYSTALLOGRAPHY 8 Å
Organisms	Sus scrofa
Macromolecule	POTASSIUM-TRANSPORTING ATPASE ALPHA CHAIN 1 (protein) POTASSIUM-TRANSPORTING ATPASE SUBUNIT BETA (protein)

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4UX2 \| pdb_00004ux2	Download File View File

Cryo-EM structure of antagonist-bound E2P gastric H,K-ATPase (SCH.E2. MgF)

Abe, K., Tani, K., Fujiyoshi, Y.

(2014) J Biological Chem 289: 30590

Released	2014-09-17
Method	ELECTRON CRYSTALLOGRAPHY 7 Å
Organisms	Sus scrofa
Macromolecule	POTASSIUM-TRANSPORTING ATPASE ALPHA CHAIN 1 (protein) POTASSIUM-TRANSPORTING ATPASE SUBUNIT BETA (protein)

1 to 25 of 84 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1AT9 | pdb_00001at9

1FQY | pdb_00001fqy

1I2H | pdb_00001i2h

1L9H | pdb_00001l9h

1OED | pdb_00001oed

2AT9 | pdb_00002at9

2B6O | pdb_00002b6o

2B6P | pdb_00002b6p

2D57 | pdb_00002d57

2XZB | pdb_00002xzb

2YN9 | pdb_00002yn9

2ZW3 | pdb_00002zw3

2ZZ9 | pdb_00002zz9

3IXZ | pdb_00003ixz

3IYZ | pdb_00003iyz

3IZ1 | pdb_00003iz1

3IZ2 | pdb_00003iz2

3VOU | pdb_00003vou

3X29 | pdb_00003x29

4AQ5 | pdb_00004aq5

4AQ9 | pdb_00004aq9

4BGN | pdb_00004bgn

4P79 | pdb_00004p79

4UX1 | pdb_00004ux1

4UX2 | pdb_00004ux2