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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Fry, E.H."

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Search Summary

This query matches 10 Structures.

Refinements

Structure Determination Methodology

experimental (10)

Scientific Name of Source Organism

	Rattus norvegicus (4)
	Homo sapiens (3)
	Streptococcus pneumoniae R6 (2)
	Mus musculus (1)

Taxonomy

	Eukaryota (8)
	Bacteria (2)

Experimental Method

X-RAY DIFFRACTION (10)

Polymer Entity Type

Protein (10)

Refinement Resolution (Å)

	2.0 - 2.5 (4)
	2.5 - 3.0 (3)
	3.0 - 3.5 (3)

Release Date

2005 - 2009 (10)

Enzyme Classification Name

	Hydrolases (7)
	Ligases (2)

Symmetry Type

	Cyclic (8)
	Dihedral (4)
	Asymmetric (3)

SCOP Classification

	All beta proteins (7)
	Alpha and beta proteins (a/b) (6)

AllSelected

1 to 10 of 10 Structures

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2AM1 \| pdb_00002am1	Download File View File

sp protein ligand 1

Longenecker, K.L., Stamper, G.F., Hajduk, P.J., Fry, E.H., Jakob, C.G., Harlan, J.E., Edalji, R., Bartley, D.M., Walter, K.A., Solomon, L.R.

(2005) Protein Sci 14: 3039-3047

Released	2006-01-24
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Streptococcus pneumoniae R6
Macromolecule	UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-alanyl-D-alanine ligase, MurF protein (protein)
Unique Ligands	1LG, GOL

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2AM2 \| pdb_00002am2	Download File View File

sp protein ligand 2

Longenecker, K.L., Stamper, G.F., Hajduk, P.J., Fry, E.H., Jakob, C.G., Harlan, J.E., Edalji, R., Bartley, D.M., Walter, K.A., Solomon, L.R.

(2005) Protein Sci 14: 3039-3047

Released	2006-01-24
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Streptococcus pneumoniae R6
Macromolecule	UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-alanyl-D-alanine ligase, MurF protein (protein)
Unique Ligands	2LG

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2G5P \| pdb_00002g5p	Download File View File

Crystal structure of human dipeptidyl peptidase IV (DPPIV) complexed with cyanopyrrolidine (C5-pro-pro) inhibitor 21ac

Longenecker, K.L., Fry, E.H., Lake, M.R., Solomon, L.R., Pei, Z., Li, X.

(2006) J Med Chem 49: 3520-3535

Released	2006-07-04
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Dipeptidyl peptidase 4 (protein)
Unique Ligands	ADF

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2G5T \| pdb_00002g5t	Download File View File

Crystal structure of human dipeptidyl peptidase IV (DPPIV) complexed with cyanopyrrolidine (C5-pro-pro) inhibitor 21ag

Longenecker, K.L., Fry, E.H., Lake, M.R., Solomon, L.R., Pei, Z., Li, X.

(2006) J Med Chem 49: 3520-3535

Released	2006-07-04
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Dipeptidyl peptidase 4 (protein)
Unique Ligands	ACF

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2G63 \| pdb_00002g63	Download File View File

Crystal structure of human dipeptidyl peptidase IV (DPPIV) complexed with cyanopyrrolidine (C5-pro-pro) inhibitor 24b

Longenecker, K.L., Fry, E.H., Lake, M.R., Solomon, L.R., Pei, Z., Li, X.

(2006) J Med Chem 49: 3520-3535

Released	2006-07-04
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Dipeptidyl peptidase 4 (protein)
Unique Ligands	AAF

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2GBC \| pdb_00002gbc	Download File View File

Native DPP-IV (CD26) from Rat

Longenecker, K.L., Jakob, C.G., Fry, E.H., Wilk, S.

(2006) Biochemistry 45: 7474-7482

Released	2006-07-04
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Rattus norvegicus
Macromolecule	Dipeptidyl peptidase 4 (protein)
Unique Ligands	NAG

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2GBF \| pdb_00002gbf	Download File View File

rat dpp-IV with alkynyl cyanopyrrolidine #1

Longenecker, K.L., Jakob, C.G., Fry, E.H., Wilk, S.

(2006) Biochemistry 45: 7474-7482

Released	2006-07-04
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Rattus norvegicus
Macromolecule	Dipeptidyl peptidase 4 (protein)
Unique Ligands	AIA

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2GBG \| pdb_00002gbg	Download File View File

rat DPP-IV with alkynyl cyanopyrrolidine #2

Longenecker, K.L., Jakob, C.G., Fry, E.H., Wilk, S.

(2006) Biochemistry 45: 7474-7482

Released	2006-07-04
Method	X-RAY DIFFRACTION 3 Å
Organisms	Rattus norvegicus
Macromolecule	Dipeptidyl peptidase 4 (protein)
Unique Ligands	1AD, SO4

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2GBI \| pdb_00002gbi	Download File View File

rat DPP-IV with xanthine inhibitor 4

Longenecker, K.L., Jakob, C.G., Fry, E.H., Wilk, S.

(2006) Biochemistry 45: 7474-7482

Released	2006-07-04
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Rattus norvegicus
Macromolecule	Dipeptidyl peptidase 4 (protein)
Unique Ligands	XIH

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3E8U \| pdb_00003e8u	Download File View File

Crystal structure and thermodynamic analysis of diagnostic Fab 106.3 complexed with BNP 5-13 (C10A) reveal basis of selective molecular recognition

Longenecker, K.L., Ruan, Q., Fry, E.H., Saldana, S.S., Brophy, S.E., Richardson, P.L., Tetin, S.Y.

(2009) Proteins 76: 536-547

Released	2009-07-07
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mus musculus
Macromolecule	BNP peptide epitope (protein) Fab 106.3 heavy chain (protein) Fab 106.3 light chain (protein)

1 to 10 of 10 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

2AM1 | pdb_00002am1

sp protein ligand 1

2AM2 | pdb_00002am2

sp protein ligand 2

2G5P | pdb_00002g5p

Crystal structure of human dipeptidyl peptidase IV (DPPIV) complexed with cyanopyrrolidine (C5-pro-pro) inhibitor 21ac

2G5T | pdb_00002g5t

Crystal structure of human dipeptidyl peptidase IV (DPPIV) complexed with cyanopyrrolidine (C5-pro-pro) inhibitor 21ag

2G63 | pdb_00002g63

Crystal structure of human dipeptidyl peptidase IV (DPPIV) complexed with cyanopyrrolidine (C5-pro-pro) inhibitor 24b

2GBC | pdb_00002gbc

Native DPP-IV (CD26) from Rat

2GBF | pdb_00002gbf

rat dpp-IV with alkynyl cyanopyrrolidine #1

2GBG | pdb_00002gbg

rat DPP-IV with alkynyl cyanopyrrolidine #2

2GBI | pdb_00002gbi

rat DPP-IV with xanthine inhibitor 4

3E8U | pdb_00003e8u

Crystal structure and thermodynamic analysis of diagnostic Fab 106.3 complexed with BNP 5-13 (C10A) reveal basis of selective molecular recognition

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2AM1 | pdb_00002am1

2AM2 | pdb_00002am2

2G5P | pdb_00002g5p

2G5T | pdb_00002g5t

2G63 | pdb_00002g63

2GBC | pdb_00002gbc

2GBF | pdb_00002gbf

2GBG | pdb_00002gbg

2GBI | pdb_00002gbi

3E8U | pdb_00003e8u