RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Structure Author = "Foong, W.E."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 15 Structures.

Refinements

Structure Determination Methodology

experimental (15)

Scientific Name of Source Organism

	Escherichia coli K-12 (15)
	synthetic construct (15)

Taxonomy

	Bacteria (15)
	other sequences (15)

Experimental Method

X-RAY DIFFRACTION (15)

Polymer Entity Type

Protein (15)

Refinement Resolution (Å)

	2.0 - 2.5 (2)
	2.5 - 3.0 (11)
	3.0 - 3.5 (2)

Release Date

2020 - 2024 (15)

Membrane Protein Annotation

	MemProtMD (15)
	PDBTM (15)
	mpstruc (11)
	OPM (3)

Symmetry Type

	Asymmetric (14)
	Cyclic (1)

AllSelected

1 to 15 of 15 Structures

Page 1 of 1

Sort by

Explore in 3D

6ZO5 \| pdb_00006zo5	Download File View File

Fusidic acid binding to the TM1/TM2 groove of AcrB-G619P_G621P

Tam, H.K., Foong, W.E., Pos, K.M.

(2021) Nat Commun 12: 3889-3889

Released	2021-05-19
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	DARPIN (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	C14, D10, D12, DDR, EDO, FUA, GOL, HEX, LMT, LPX, OCT, PGE, PTY, SO4, XPE

Explore in 3D

6ZO6 \| pdb_00006zo6	Download File View File

Minocycline binding to the deep binding pocket of AcrB-G619P

Tam, H.K., Foong, W.E., Pos, K.M.

(2021) Nat Commun 12: 3889-3889

Released	2021-05-19
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	DARPIN (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	1PE, 8K6, C14, CL, D10, D12, DDQ, DDR, EDO, GOL, HEX, LMT, LPX, MIY, MYS, OCT, PG4, PGE, PTY, R16, SO4

Explore in 3D

6ZO7 \| pdb_00006zo7	Download File View File

3-Formylrifamycin SV binding to the access pocket of AcrB-G619P L and T protomer

Tam, H.K., Foong, W.E., Pos, K.M.

(2021) Nat Commun 12: 3889-3889

Released	2021-05-19
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	DARPIN (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	3YI, CL, D10, D12, DDQ, EDO, GOL, HEX, LMT, NA, PTY, R16, SO4

Explore in 3D

6ZO8 \| pdb_00006zo8	Download File View File

Minocycline binding to the deep binding pocket of AcrB-G621P

Tam, H.K., Foong, W.E., Pos, K.M.

(2021) Nat Commun 12: 3889-3889

Released	2021-05-19
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	DARPIN (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	C14, CL, D10, D12, DDQ, DDR, EDO, GOL, HEX, LMT, LMU, LPX, MIY, NA, OCT, PTY, SO4

Explore in 3D

6ZO9 \| pdb_00006zo9	Download File View File

Binding of two rifabutins to the access pocket of AcrB-G621P T protomer

Tam, H.K., Foong, W.E., Pos, K.M.

(2021) Nat Commun 12: 3889-3889

Released	2021-05-19
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	DARPIN (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	C14, CL, D10, D12, DDR, EDO, GOL, HEX, LMT, OCT, PTY, RBT, SO4

Explore in 3D

6ZOA \| pdb_00006zoa	Download File View File

Partially induced AcrB T protomer and DDM binding to the TM8/PC2 pathway of AcrB L2 protomer

Tam, H.K., Foong, W.E., Pos, K.M.

(2021) Nat Commun 12: 3889-3889

Released	2021-05-19
Method	X-RAY DIFFRACTION 3.05 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	DARPIN (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	C14, CL, D10, D12, DDQ, EDO, GOL, HEX, LMT, LNK, OCT, PTY

Explore in 3D

6ZOB \| pdb_00006zob	Download File View File

3-Formylrifamycin SV binding to the access pocket of AcrB L protomer

Tam, H.K., Foong, W.E., Pos, K.M.

(2021) Nat Commun 12: 3889-3889

Released	2021-05-19
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	DARPIN (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	3YI, CL, D10, DDQ, DDR, EDO, ETE, GOL, HEX, LMT, OCT

Explore in 3D

6ZOC \| pdb_00006zoc	Download File View File

Erythromycin binding to the access pocket of AcrB-G616P L protomer and 3-formylrifamycin SV binding to the access pocket of AcrB-G616P T protomer

Tam, H.K., Foong, W.E., Pos, K.M.

(2021) Nat Commun 12: 3889-3889

Released	2021-05-19
Method	X-RAY DIFFRACTION 2.89 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	DARPIN (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	3YI, C14, D12, DDQ, EDO, ERY, GOL, HEX, LMT, OCT, PG4, PTY, SO4

Explore in 3D

6ZOE \| pdb_00006zoe	Download File View File

AcrB-F563A symmetric T protomer

Tam, H.K., Foong, W.E., Pos, K.M.

(2021) Nat Commun 12: 3889-3889

Released	2021-05-19
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	DARPIN (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	D10, EDO, LMT, PGE

Explore in 3D

6ZOF \| pdb_00006zof	Download File View File

Fusidic acid binding to the TM7/TM8 groove of AcrB-F380A T protomer

Tam, H.K., Foong, W.E., Pos, K.M.

(2021) Nat Commun 12: 3889-3889

Released	2021-05-19
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	DARPIN (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	D10, DDQ, FUA, GOL, LMT, PTY, R16, SO4

Explore in 3D

6ZOG \| pdb_00006zog	Download File View File

Minocycline binding to the deep binding pocket of AcrB-I38F_I671T

Tam, H.K., Foong, W.E., Pos, K.M.

(2021) Nat Commun 12: 3889-3889

Released	2021-05-19
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	DARPIN (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	8K6, C14, D10, D12, DDQ, DDR, EDO, GOL, LMT, MIY, MYS, OCT, PTY, SO4

Explore in 3D

6ZOH \| pdb_00006zoh	Download File View File

3-Formylrifamycin SV binding to the access pocket of AcrB-G619P_G621P L and T protomers

Tam, H.K., Foong, W.E., Pos, K.M.

(2021) Nat Commun 12: 3889-3889

Released	2021-05-19
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	DARPIN (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	3YI, D10, D12, DDQ, DDR, EDO, GOL, HEX, LMT, LPX, PTY

Explore in 3D

7OUK \| pdb_00007ouk	Download File View File

BDM88855 inhibitor bound to the transmembrane domain of AcrB

Tam, H.K., Foong, W.E., Pos, K.M.

(2022) Nat Commun 13: 115-115

Released	2021-12-29
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	DARPIN (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	1K8, C14, D10, DDQ, DDR, EDO, GOL, LMT, LPX, OCT, SO4

Explore in 3D

7OUL \| pdb_00007oul	Download File View File

BDM88832 inhibitor bound to the transmembrane domain of AcrB-R971A

Tam, H.K., Foong, W.E., Pos, K.M.

(2022) Nat Commun 13: 115-115

Released	2021-12-29
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	DARPIN (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	1KE, C14, D12, DDQ, EDO, GOL, LMT, LPX, SO4

Explore in 3D

7OUM \| pdb_00007oum	Download File View File

BDM88855 inhibitor bound to the transmembrane domain of AcrB-R971A

Tam, H.K., Foong, W.E., Pos, K.M.

(2022) Nat Commun 13: 115-115

Released	2021-12-29
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	DARPIN (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	1K8, C14, D10, DDQ, EDO, GOL, LMT, LPX, OCT, SO4

1 to 15 of 15 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

6ZO5 | pdb_00006zo5

Fusidic acid binding to the TM1/TM2 groove of AcrB-G619P_G621P

6ZO6 | pdb_00006zo6

Minocycline binding to the deep binding pocket of AcrB-G619P

6ZO7 | pdb_00006zo7

3-Formylrifamycin SV binding to the access pocket of AcrB-G619P L and T protomer

6ZO8 | pdb_00006zo8

Minocycline binding to the deep binding pocket of AcrB-G621P

6ZO9 | pdb_00006zo9

Binding of two rifabutins to the access pocket of AcrB-G621P T protomer

6ZOA | pdb_00006zoa

Partially induced AcrB T protomer and DDM binding to the TM8/PC2 pathway of AcrB L2 protomer

6ZOB | pdb_00006zob

3-Formylrifamycin SV binding to the access pocket of AcrB L protomer

6ZOC | pdb_00006zoc

Erythromycin binding to the access pocket of AcrB-G616P L protomer and 3-formylrifamycin SV binding to the access pocket of AcrB-G616P T protomer

6ZOE | pdb_00006zoe

AcrB-F563A symmetric T protomer

6ZOF | pdb_00006zof

Fusidic acid binding to the TM7/TM8 groove of AcrB-F380A T protomer

6ZOG | pdb_00006zog

Minocycline binding to the deep binding pocket of AcrB-I38F_I671T

6ZOH | pdb_00006zoh

3-Formylrifamycin SV binding to the access pocket of AcrB-G619P_G621P L and T protomers

7OUK | pdb_00007ouk

BDM88855 inhibitor bound to the transmembrane domain of AcrB

7OUL | pdb_00007oul

BDM88832 inhibitor bound to the transmembrane domain of AcrB-R971A

7OUM | pdb_00007oum

BDM88855 inhibitor bound to the transmembrane domain of AcrB-R971A

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Membrane Protein Annotation

Symmetry Type

6ZO5 | pdb_00006zo5

6ZO6 | pdb_00006zo6

6ZO7 | pdb_00006zo7

6ZO8 | pdb_00006zo8

6ZO9 | pdb_00006zo9

6ZOA | pdb_00006zoa

6ZOB | pdb_00006zob

6ZOC | pdb_00006zoc

6ZOE | pdb_00006zoe

6ZOF | pdb_00006zof

6ZOG | pdb_00006zog

6ZOH | pdb_00006zoh

7OUK | pdb_00007ouk

7OUL | pdb_00007oul

7OUM | pdb_00007oum