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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Ferrara, P."

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Search Summary

This query matches 19 Structures.

Refinements

Structure Determination Methodology

experimental (19)

Scientific Name of Source Organism

	Homo sapiens (14)
	Pseudomonas fluorescens (5)
	Thermotoga maritima (1)

Taxonomy

	Eukaryota (14)
	Bacteria (6)

Experimental Method

X-RAY DIFFRACTION (19)

Polymer Entity Type

Protein (19)

Refinement Resolution (Å)

	1.0 - 1.5 (13)
	1.5 - 2.0 (6)

Release Date

	2005 - 2009 (13)
	2010 - 2014 (6)

Enzyme Classification Name

	Hydrolases (14)
	Lyases (5)
	Transferases (1)

Symmetry Type

	Cyclic (18)
	Asymmetric (1)

SCOP Classification

	Alpha and beta proteins (a/b) (13)
	Artifacts (4)

AllSelected

1 to 19 of 19 Structures

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2OR3 \| pdb_00002or3	Download File View File

Pre-oxidation Complex of Human DJ-1

Witt, A.C., Lakshminarasimhan, M., Wilson, M.A.

(2008) Biochemistry 47: 7430-7440

Released	2007-02-13
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Homo sapiens
Macromolecule	Protein DJ-1 (protein)
Unique Ligands	SO4

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2RK3 \| pdb_00002rk3	Download File View File

Structure of A104T DJ-1

Lakshminarasimhan, M., Maldonado, M.T., Zhou, W., Fink, A.L., Wilson, M.A.

(2008) Biochemistry 47: 1381-1392

Released	2008-01-15
Method	X-RAY DIFFRACTION 1.05 Å
Organisms	Homo sapiens
Macromolecule	Protein DJ-1 (protein)

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2RK4 \| pdb_00002rk4	Download File View File

Structure of M26I DJ-1

Lakshminarasimhan, M., Maldonado, M.T., Zhou, W., Fink, A.L., Wilson, M.A.

(2008) Biochemistry 47: 1381-1392

Released	2008-01-15
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Homo sapiens
Macromolecule	Protein DJ-1 (protein)

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2RK6 \| pdb_00002rk6	Download File View File

Structure of E163K DJ-1

Lakshminarasimhan, M., Maldonado, M.T., Zhou, W., Fink, A.L., Wilson, M.A.

(2008) Biochemistry 47: 1381-1392

Released	2008-01-15
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Homo sapiens
Macromolecule	Protein DJ-1 (protein)

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3B36 \| pdb_00003b36	Download File View File

Structure of M26L DJ-1

Lakshminarasimhan, M., Maldonado, M.T., Zhou, W., Fink, A.L., Wilson, M.A.

(2008) Biochemistry 47: 1381-1392

Released	2008-01-15
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	Protein DJ-1 (protein)
Unique Ligands	CL, EDO

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3B38 \| pdb_00003b38	Download File View File

Structure of A104V DJ-1

Lakshminarasimhan, M., Maldonado, M.T., Zhou, W., Fink, A.L., Wilson, M.A.

(2008) Biochemistry 47: 1381-1392

Released	2008-01-15
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Protein DJ-1 (protein)
Unique Ligands	EDO

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3B3A \| pdb_00003b3a	Download File View File

Structure of E163K/R145E DJ-1

Lakshminarasimhan, M., Maldonado, M.T., Zhou, W., Fink, A.L., Wilson, M.A.

(2008) Biochemistry 47: 1381-1392

Released	2008-01-15
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	Protein DJ-1 (protein)
Unique Ligands	CL, EDO

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3CY6 \| pdb_00003cy6	Download File View File

Crystal Structure of E18Q DJ-1

Witt, A.C., Lakshminarasimhan, M., Remington, B.C., Hasim, S., Pozharski, E., Wilson, M.A.

(2008) Biochemistry 47: 7430-7440

Released	2008-07-01
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Homo sapiens
Macromolecule	Protein DJ-1 (protein)

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3CYF \| pdb_00003cyf	Download File View File

Crystal Structure of E18N DJ-1

Witt, A.C., Lakshminarasimhan, M., Remington, B.C., Hasim, S., Pozharski, E., Wilson, M.A.

(2008) Biochemistry 47: 7430-7440

Released	2008-07-01
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Protein DJ-1 (protein)

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3CZ9 \| pdb_00003cz9	Download File View File

Crystal Structure of E18L DJ-1

Witt, A.C., Lakshminarasimhan, M., Remington, B.C., Hasim, S., Pozharski, E., Wilson, M.A.

(2008) Biochemistry 47: 7430-7440

Released	2008-07-01
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Homo sapiens
Macromolecule	Protein DJ-1 (protein)
Unique Ligands	P4C

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3CZA \| pdb_00003cza	Download File View File

Crystal Structure of E18D DJ-1

Witt, A.C., Lakshminarasimhan, M., Remington, B.C., Hashim, S., Pozharski, E., Wilson, M.A.

(2008) Biochemistry 47: 7430-7440

Released	2008-07-01
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Homo sapiens
Macromolecule	Protein DJ-1 (protein)
Unique Ligands	MLA

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3EZG \| pdb_00003ezg	Download File View File

Crystal structure of E18Q DJ-1 with oxidized C106

Lakshminarasimhan, M., Wilson, M.A.

(2009) J Biological Chem 284: 6476-6485

Released	2008-12-30
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Homo sapiens
Macromolecule	Protein DJ-1 (protein)

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3F71 \| pdb_00003f71	Download File View File

Crystal structure of E18D DJ-1 with oxidized C106

Lakshminarasimhan, M., Wilson, M.A.

(2009) J Biological Chem 284: 6476-6485

Released	2008-12-30
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Homo sapiens
Macromolecule	Protein DJ-1 (protein)

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3NON \| pdb_00003non	Download File View File

Crystal Structure of Isocyanide Hydratase from Pseudomonas fluorescens

Lakshminarasimhan, M., Madzelan, P., Nan, R., Milkovic, N.M., Wilson, M.A.

(2010) J Biological Chem 285: 29651-29661

Released	2010-07-14
Method	X-RAY DIFFRACTION 1.05 Å
Organisms	Pseudomonas fluorescens
Macromolecule	Isocyanide hydratase (protein)
Unique Ligands	EDO

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3NOO \| pdb_00003noo	Download File View File

Crystal Structure of C101A Isocyanide Hydratase from Pseudomonas fluorescens

Lakshminarasimhan, M., Madzelan, P., Nan, R., Milkovic, N.M., Wilson, M.A.

(2010) J Biological Chem 285: 29651-29661

Released	2010-07-07
Method	X-RAY DIFFRACTION 1.03 Å
Organisms	Pseudomonas fluorescens
Macromolecule	ThiJ/PfpI family protein (protein)
Unique Ligands	ACT, EDO

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3NOQ \| pdb_00003noq	Download File View File

Crystal Structure of C101S Isocyanide Hydratase from Pseudomonas fluorescens

Lakshminarasimhan, M., Madzelan, P., Nan, R., Milkovic, N.M., Wilson, M.A.

(2010) J Biological Chem 285: 29651-29661

Released	2010-07-07
Method	X-RAY DIFFRACTION 1 Å
Organisms	Pseudomonas fluorescens
Macromolecule	ThiJ/PfpI family protein (protein)
Unique Ligands	EDO, NHE

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3NOR \| pdb_00003nor	Download File View File

Crystal Structure of T102S Isocyanide Hydratase from Pseudomonas fluorescens

Lakshminarasimhan, M., Madzelan, P., Nan, R., Milkovic, N.M., Wilson, M.A.

(2010) J Biological Chem 285: 29651-29661

Released	2010-07-07
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Pseudomonas fluorescens
Macromolecule	ThiJ/PfpI family protein (protein)
Unique Ligands	CIT

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3NOV \| pdb_00003nov	Download File View File

Crystal Structure of D17E Isocyanide Hydratase from Pseudomonas fluorescens

Lakshminarasimhan, M., Madzelan, P., Nan, R., Milkovic, N.M., Wilson, M.A.

(2010) J Biological Chem 285: 29651-29661

Released	2010-07-07
Method	X-RAY DIFFRACTION 1.05 Å
Organisms	Pseudomonas fluorescens
Macromolecule	ThiJ/PfpI family protein (protein)
Unique Ligands	ACT

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4BUZ \| pdb_00004buz	Download File View File

SIR2 COMPLEX STRUCTURE MIXTURE OF EX-527 INHIBITOR AND REACTION PRODUCTS OR OF REACTION SUBSTRATES P53 PEPTIDE AND NAD

Weyand, M., Lakshminarasimhan, M., Gertz, M., Steegborn, C.

(2013) Proc Natl Acad Sci U S A 110: E2772

Released	2013-07-17
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens Thermotoga maritima
Macromolecule	CELLULAR TUMOR ANTIGEN P53 (protein) NAD-DEPENDENT PROTEIN DEACETYLASE (protein)
Unique Ligands	EDO, NAD, OAD, OCZ, ZN

1 to 19 of 19 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

2OR3 | pdb_00002or3

Pre-oxidation Complex of Human DJ-1

2RK3 | pdb_00002rk3

Structure of A104T DJ-1

2RK4 | pdb_00002rk4

Structure of M26I DJ-1

2RK6 | pdb_00002rk6

Structure of E163K DJ-1

3B36 | pdb_00003b36

Structure of M26L DJ-1

3B38 | pdb_00003b38

Structure of A104V DJ-1

3B3A | pdb_00003b3a

Structure of E163K/R145E DJ-1

3CY6 | pdb_00003cy6

Crystal Structure of E18Q DJ-1

3CYF | pdb_00003cyf

Crystal Structure of E18N DJ-1

3CZ9 | pdb_00003cz9

Crystal Structure of E18L DJ-1

3CZA | pdb_00003cza

Crystal Structure of E18D DJ-1

3EZG | pdb_00003ezg

Crystal structure of E18Q DJ-1 with oxidized C106

3F71 | pdb_00003f71

Crystal structure of E18D DJ-1 with oxidized C106

3NON | pdb_00003non

Crystal Structure of Isocyanide Hydratase from Pseudomonas fluorescens

3NOO | pdb_00003noo

Crystal Structure of C101A Isocyanide Hydratase from Pseudomonas fluorescens

3NOQ | pdb_00003noq

Crystal Structure of C101S Isocyanide Hydratase from Pseudomonas fluorescens

3NOR | pdb_00003nor

Crystal Structure of T102S Isocyanide Hydratase from Pseudomonas fluorescens

3NOV | pdb_00003nov

Crystal Structure of D17E Isocyanide Hydratase from Pseudomonas fluorescens

4BUZ | pdb_00004buz

SIR2 COMPLEX STRUCTURE MIXTURE OF EX-527 INHIBITOR AND REACTION PRODUCTS OR OF REACTION SUBSTRATES P53 PEPTIDE AND NAD

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2OR3 | pdb_00002or3

2RK3 | pdb_00002rk3

2RK4 | pdb_00002rk4

2RK6 | pdb_00002rk6

3B36 | pdb_00003b36

3B38 | pdb_00003b38

3B3A | pdb_00003b3a

3CY6 | pdb_00003cy6

3CYF | pdb_00003cyf

3CZ9 | pdb_00003cz9

3CZA | pdb_00003cza

3EZG | pdb_00003ezg

3F71 | pdb_00003f71

3NON | pdb_00003non

3NOO | pdb_00003noo

3NOQ | pdb_00003noq

3NOR | pdb_00003nor

3NOV | pdb_00003nov

4BUZ | pdb_00004buz