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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Dai, H."

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Search Summary

This query matches 27 Structures.

Refinements

Structure Determination Methodology

experimental (27)

Scientific Name of Source Organism

	Homo sapiens (16)
	Rattus norvegicus (6)
	Gallus gallus (2)
	Bos taurus (1)
	Manduca sexta (1)
	Plodia interpunctella (1)

Taxonomy

	Eukaryota (24)
	Eukaryota (eukaryotes) (3)

Experimental Method

	X-RAY DIFFRACTION (19)
	SOLUTION NMR (8)

Polymer Entity Type

Protein (27)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (6)
	2.0 - 2.5 (6)
	2.5 - 3.0 (4)
	3.0 - 3.5 (1)

Release Date

	2000 - 2004 (2)
	2005 - 2009 (15)
	2010 - 2014 (7)
	2015 - 2019 (3)

Enzyme Classification Name

	Transferases (12)
	Hydrolases (13)
	Ligases (3)
	Oxidoreductases (1)

Membrane Protein Annotation

OPM (5)

Symmetry Type

	Asymmetric (20)
	Cyclic (9)

SCOP Classification

	All beta proteins (6)
	Alpha and beta proteins (a/b) (4)
	Artifacts (3)
	Alpha and beta proteins (a+b) (2)
	All alpha proteins (1)
	Peptides (1)

AllSelected

1 to 25 of 27 Structures

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1TMW \| pdb_00001tmw	Download File View File

Solution structure of Human Coactosin Like Protein D123N

Dai, H., Wu, J., Xu, Y., Tang, Y., Ding, H., Shi, Y.

To be published

Released	2005-06-28
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Coactosin-like protein (protein)

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1U4A \| pdb_00001u4a	Download File View File

Solution structure of human SUMO-3 C47S

Ding, H., Xu, Y., Dai, H., Tang, Y., Wu, J., Shi, Y.

(2005) Biochemistry 44: 2790-2799

Released	2005-03-08
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Ubiquitin-like protein SMT3A (protein)

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1W15 \| pdb_00001w15	Download File View File

rat synaptotagmin 4 C2B domain in the presence of calcium

Dai, H., Shin, O.-H., Machius, M., Tomchick, D.R., Sudhof, T.C., Rizo, J.

(2004) Nat Struct Mol Biol 11: 844

Released	2004-08-13
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Rattus norvegicus
Macromolecule	SYNAPTOTAGMIN IV (protein)
Unique Ligands	CA, CL, NA

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1W16 \| pdb_00001w16	Download File View File

rat synaptotagmin 4 C2B domain in the absence of calcium

Dai, H., Shin, O.-H., Machius, M., Tomchick, D.R., Sudhof, T.C., Rizo, J.

(2004) Nat Struct Mol Biol 11: 844

Released	2004-08-13
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Rattus norvegicus
Macromolecule	SYNAPTOTAGMIN IV (protein)
Unique Ligands	CL, NA

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2AMN \| pdb_00002amn	Download File View File

Solution structure of Fowlicidin-1, a novel Cathelicidin antimicrobial peptide from chicken

Xiao, Y., Dai, H., Bommineni, Y.R., Prakash, O., Zhang, G.

(2006) FEBS J 273: 2581-2593

Released	2006-07-18
Method	SOLUTION NMR
Organisms	Gallus gallus
Macromolecule	cathelicidin (protein)

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2BWQ \| pdb_00002bwq	Download File View File

Crystal Structure of the RIM2 C2A-domain at 1.4 angstrom Resolution

Dai, H., Tomchick, D.R., Garcia, J., Sudhof, T.C., Machius, M., Rizo, J.

(2005) Biochemistry 44: 13533

Released	2005-10-20
Method	X-RAY DIFFRACTION 1.41 Å
Organisms	Rattus norvegicus
Macromolecule	REGULATING SYNAPTIC MEMBRANE EXOCYTOSIS PROTEIN 2 (protein)
Unique Ligands	SO4

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2CJS \| pdb_00002cjs	Download File View File

Structural Basis for a Munc13-1 Homodimer - Munc13-1 - RIM Heterodimer Switch: C2-domains as Versatile Protein-Protein Interaction Modules

Lu, J., Machius, M., Dulubova, I., Dai, H., Sudhof, T.C., Tomchick, D.R., Rizo, J.

(2006) PLoS Biol 4: E192

Released	2006-06-07
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Rattus norvegicus
Macromolecule	REGULATING SYNAPTIC MEMBRANE EXOCYTOSIS PROTEIN 2 (protein) UNC-13 HOMOLOG A (protein)
Unique Ligands	EDO, GOL, ZN

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2CJT \| pdb_00002cjt	Download File View File

Structural Basis for a Munc13-1 Homodimer - Munc13-1 - RIM Heterodimer Switch: C2-domains as Versatile Protein-Protein Interaction Modules

Lu, J., Machius, M., Dulubova, I., Dai, H., Sudhof, T.C., Tomchick, D.R., Rizo, J.

(2006) PLoS Biol 4: E192

Released	2006-06-07
Method	X-RAY DIFFRACTION 1.44 Å
Organisms	Rattus norvegicus
Macromolecule	UNC-13 HOMOLOG A (protein)
Unique Ligands	EDO, FMT

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2DK9 \| pdb_00002dk9	Download File View File

Solution structure of Calponin Homology domain of Human MICAL-1

Sun, H., Dai, H., Zhang, J., Xiong, S., Wu, J., Shi, Y.

(2006) J Biomol NMR 36: 295-300

Released	2006-09-19
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	NEDD9-interacting protein with calponin homology and LIM domains (protein)

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2FEI \| pdb_00002fei	Download File View File

Solution structure of the second SH3 domain of Human CMS protein

Yao, B., Dai, H., Jiao, Y., Wu, J., Shi, Y.

(2007) Biochim Biophys Acta 1774: 35-43

Released	2006-12-05
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	CD2-associated protein (protein)

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2HFR \| pdb_00002hfr	Download File View File

solution structure of antimicrobial peptide Fowlicidin 3

Bommineni, Y.R., Dai, H., Gong, Y., Prakash, O., Zhang, G.

(2007) FEBS J 274: 418-428

Released	2007-04-17
Method	SOLUTION NMR
Organisms	Gallus gallus
Macromolecule	Fowlicidin-3 (protein)

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2JR8 \| pdb_00002jr8	Download File View File

Solution structure of Manduca sexta moricin

Gong, Y., Dai, H., Rayaprolu, S., Huang, R., Prakash, O., Jiang, H.

(2008) J Pept Sci 14: 855-863

Released	2008-03-25
Method	SOLUTION NMR
Organisms	Manduca sexta
Macromolecule	Antimicrobial peptide moricin (protein)

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2KHA \| pdb_00002kha	Download File View File

Solution Structure of a Pathogen Recognition Domain from a Lepidopteran Insect, Plodia interpunctella

Dai, H., Hiromasa, Y., Fabrick, J., Vandervelde, D., Kanost, M., Krishnamoorthi, R.

(2013) Biochemistry 52: 161-170

Released	2010-03-16
Method	SOLUTION NMR
Organisms	Plodia interpunctella
Macromolecule	Beta-1,3-glucan-binding protein (protein)

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2Q3X \| pdb_00002q3x	Download File View File

The RIM1alpha C2B domain

Guan, R., Dai, H., Tomchick, D.R., Machius, M., Sudhof, T.C., Rizo, J.

(2007) Biochemistry 46: 8988-8998

Released	2007-08-28
Method	X-RAY DIFFRACTION 1.73 Å
Organisms	Rattus norvegicus
Macromolecule	Regulating synaptic membrane exocytosis protein 1 (protein)
Unique Ligands	CL, NA, SO4

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3GLR \| pdb_00003glr	Download File View File

Crystal Structure of human SIRT3 with acetyl-lysine AceCS2 peptide

Jin, L., Wei, W., Jiang, Y., Peng, H., Cai, J., Mao, C., Dai, H., Bemis, J.E., Jirousek, M.R., Milne, J.C., Westphal, C.H., Perni, R.B.

(2009) J Biological Chem 284: 24394-24405

Released	2009-06-16
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Acetyl-coenzyme A synthetase 2-like, mitochondrial (protein) NAD-dependent deacetylase sirtuin-3, mitochondrial (protein)
Unique Ligands	BCT, GOL, SO4, ZN

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3GLS \| pdb_00003gls	Download File View File

Crystal Structure of Human SIRT3

Jin, L., Wei, W., Jiang, Y., Peng, H., Cai, J., Mao, C., Dai, H., Bemis, J.E., Jirousek, M.R., Milne, J.C., Westphal, C.H., Perni, R.B.

(2009) J Biological Chem 284: 24394-24405

Released	2009-06-16
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	NAD-dependent deacetylase sirtuin-3, mitochondrial (protein)
Unique Ligands	PGE, SO4, ZN

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3GLT \| pdb_00003glt	Download File View File

Crystal Structure of Human SIRT3 with ADPR bound to the AceCS2 peptide containing a thioacetyl lysine

Jin, L., Wei, W., Jiang, Y., Peng, H., Cai, J., Mao, C., Dai, H., Bemis, J.E., Jirousek, M.R., Milne, J.C., Westphal, C.H., Perni, R.B.

(2009) J Biological Chem 284: 24394-24405

Released	2009-06-16
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Acetyl-coenzyme A synthetase 2-like, mitochondrial (protein) NAD-dependent deacetylase sirtuin-3, mitochondrial (protein)
Unique Ligands	CO3, SO4, ZN

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3GLU \| pdb_00003glu	Download File View File

Crystal Structure of Human SIRT3 with AceCS2 peptide

Jin, L., Wei, W., Jiang, Y., Peng, H., Cai, J., Mao, C., Dai, H., Bemis, J.E., Jirousek, M.R., Milne, J.C., Westphal, C.H., Perni, R.B.

(2009) J Biological Chem 284: 24394-24405

Released	2009-06-16
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Acetyl-coenzyme A synthetase 2-like, mitochondrial (protein) NAD-dependent deacetylase sirtuin-3, mitochondrial (protein)
Unique Ligands	SO4, ZN

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3N0A \| pdb_00003n0a	Download File View File

Crystal structure of auxilin (40-400)

Harrison, S.C., Guan, R., Dai, H., Kirchhausen, T.

(2010) Structure 18: 1191-1198

Released	2010-09-22
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bos taurus
Macromolecule	Tyrosine-protein phosphatase auxilin (protein)
Unique Ligands	CA, CL

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4FVT \| pdb_00004fvt	Download File View File

Human SIRT3 bound to Ac-ACS peptide and Carba-NAD

Dai, H.

(2012) J Org Chem 77: 7319-7329

Released	2012-08-15
Method	X-RAY DIFFRACTION 2.47 Å
Organisms	Homo sapiens
Macromolecule	Acetylated ACS2 peptide (protein) NAD-dependent protein deacetylase sirtuin-3, mitochondrial (protein)
Unique Ligands	CNA, GOL, SO4, ZN

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4G1C \| pdb_00004g1c	Download File View File

Human SIRT5 bound to Succ-IDH2 and Carba-NAD

Dai, H.

(2012) J Org Chem 77: 7319-7329

Released	2012-08-15
Method	X-RAY DIFFRACTION 1.944 Å
Organisms	Homo sapiens
Macromolecule	NAD-dependent protein deacylase sirtuin-5, mitochondrial (protein) Succinylated IDH2 peptide (protein)
Unique Ligands	CNA, ZN

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4JSR \| pdb_00004jsr	Download File View File

Crystal Structure of human SIRT3 with ELT inhibitor 11c [N-{2-[1-(6-carbamoylthieno[3,2-d]pyrimidin-4-yl)piperidin-4-yl]ethyl}-N'-ethylthiophene-2,5-dicarboxamide]

Dai, H.

(2013) J Med Chem 56: 3666-3679

Released	2013-04-24
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	NAD-dependent protein deacetylase sirtuin-3, mitochondrial (protein)
Unique Ligands	1NQ, ZN

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4JT8 \| pdb_00004jt8	Download File View File

Crystal Structure of human SIRT3 with ELT inhibitor 28 [4-(4-{2-[(2,2-dimethylpropanoyl)amino]ethyl}piperidin-1-yl)thieno[3,2-d]pyrimidine-6-carboxamide[

Dai, H.

(2013) J Med Chem 56: 3666-3679

Released	2013-04-24
Method	X-RAY DIFFRACTION 2.26 Å
Organisms	Homo sapiens
Macromolecule	NAD-dependent protein deacetylase sirtuin-3, mitochondrial (protein)
Unique Ligands	1NR, ZN

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4JT9 \| pdb_00004jt9	Download File View File

Crystal Structure of human SIRT3 with ELT inhibitor 3 [14-(4-{2-[(methylsulfonyl)amino]ethyl}piperidin-1-yl)thieno[3,2-d]pyrimidine-6-carboxamide]

Dai, H.

(2013) J Med Chem 56: 3666-3679

Released	2013-04-24
Method	X-RAY DIFFRACTION 2.24 Å
Organisms	Homo sapiens
Macromolecule	NAD-dependent protein deacetylase sirtuin-3, mitochondrial (protein)
Unique Ligands	1NS, GOL, NA, ZN

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4ZZH \| pdb_00004zzh	Download File View File

SIRT1/Activator Complex

Dai, H.

(2015) Nat Commun 6: 7645-7645

Released	2015-07-15
Method	X-RAY DIFFRACTION 3.1001 Å
Organisms	Homo sapiens
Macromolecule	NAD-dependent protein deacetylase sirtuin-1 (protein)
Unique Ligands	4TO, ZN

1 to 25 of 27 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1TMW | pdb_00001tmw

1U4A | pdb_00001u4a

1W15 | pdb_00001w15

1W16 | pdb_00001w16

2AMN | pdb_00002amn

2BWQ | pdb_00002bwq

2CJS | pdb_00002cjs

2CJT | pdb_00002cjt

2DK9 | pdb_00002dk9

2FEI | pdb_00002fei

2HFR | pdb_00002hfr

2JR8 | pdb_00002jr8

2KHA | pdb_00002kha

2Q3X | pdb_00002q3x

3GLR | pdb_00003glr

3GLS | pdb_00003gls

3GLT | pdb_00003glt

3GLU | pdb_00003glu

3N0A | pdb_00003n0a

4FVT | pdb_00004fvt

4G1C | pdb_00004g1c

4JSR | pdb_00004jsr

4JT8 | pdb_00004jt8

4JT9 | pdb_00004jt9

4ZZH | pdb_00004zzh