RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Structure Author = "Collie, G.W."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 79 Structures.

Refinements

Structure Determination Methodology

experimental (79)

Scientific Name of Source Organism

	Homo sapiens (57)
	synthetic construct (37)
	Mus musculus (1)

Taxonomy

	Eukaryota (58)
	other sequences (37)

Experimental Method

X-RAY DIFFRACTION (79)

Polymer Entity Type

	Protein (56)
	DNA (22)
	RNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (12)
	1.5 - 2.0 (30)
	2.0 - 2.5 (22)
	2.5 - 3.0 (12)
	3.0 - 3.5 (3)

Release Date

	2010 - 2014 (16)
	2015 - 2019 (12)
	2020 - 2024 (50)
	2025 - 2029 (1)

Enzyme Classification Name

	Transferases (30)
	Hydrolases (6)

Symmetry Type

	Asymmetric (36)
	Cyclic (21)

SCOP Classification

Alpha and beta proteins (a+b) (14)

AllSelected

1 to 25 of 79 Structures

Page 1 of 4

Sort by

Explore in 3D

3IBK \| pdb_00003ibk	Download File View File

Crystal structure of a telomeric RNA quadruplex

Collie, G.W., Neidle, S., Parkinson, G.N.

(2010) Nucleic Acids Res 38: 5569-5580

Released	2010-05-12
Method	X-RAY DIFFRACTION 2.2 Å
Macromolecule	RNA (5'-R((5BU)PAPGPGPGPUPUPAPGPGPGPU)-3') (nucleic acid)
Unique Ligands	K

Explore in 3D

3MIJ \| pdb_00003mij	Download File View File

Crystal structure of a telomeric RNA G-quadruplex complexed with an acridine-based ligand.

Collie, G.W., Neidle, S., Parkinson, G.N.

(2011) J Am Chem Soc 133: 2721-2728

Released	2011-02-16
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	RNA (5'-R(UPAPGPGPGPUPUPAPGPGPGPU)-3') (nucleic acid)
Unique Ligands	K, R14

Explore in 3D

3QCR \| pdb_00003qcr	Download File View File

Incomplete structural model of a human telomeric DNA quadruplex-acridine complex.

Collie, G.W., Neidle, S., Parkinson, G.N.

(2011) J Am Chem Soc 133: 2721-2728

Released	2011-02-16
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens
Macromolecule	Human telomeric repeat deoxyribonucleic acid (nucleic acid)
Unique Ligands	K, R14

Explore in 3D

3SC8 \| pdb_00003sc8	Download File View File

Crystal structure of an intramolecular human telomeric DNA G-quadruplex bound by the naphthalene diimide BMSG-SH-3

Collie, G.W., Promontorio, R., Parkinson, G.N.

(2012) J Am Chem Soc 134: 2723-2731

Released	2012-02-15
Method	X-RAY DIFFRACTION 2.302 Å
Macromolecule	Human telomeric repeat sequence (nucleic acid)
Unique Ligands	K, R8G

Explore in 3D

3T5E \| pdb_00003t5e	Download File View File

Crystal structure of an intramolecular human telomeric DNA G-quadruplex bound by the naphthalene diimide BMSG-SH-4

Collie, G.W., Promontorio, R., Parkinson, G.N.

(2012) J Am Chem Soc 134: 2723-2731

Released	2012-02-15
Method	X-RAY DIFFRACTION 2.1 Å
Macromolecule	human telomeric DNA sequence (nucleic acid)
Unique Ligands	K, T5E

Explore in 3D

3UYH \| pdb_00003uyh	Download File View File

Crystal structure of an intramolecular human telomeric DNA G-quadruplex bound by the naphthalene diimide compound, MM41

Collie, G.W., Neidle, S.

(2013) J Med Chem 56: 2959-2974

Released	2013-01-02
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	synthetic construct
Macromolecule	human telomeric DNA sequence (nucleic acid)
Unique Ligands	0DX, K

Explore in 3D

4DA3 \| pdb_00004da3	Download File View File

Crystal structure of an intramolecular human telomeric DNA G-quadruplex 21-mer bound by the naphthalene diimide compound MM41.

Collie, G.W., Neidle, S.

(2013) J Med Chem 56: 2959-2974

Released	2013-01-30
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	synthetic construct
Macromolecule	DNA (5'-D(GPGPGPTPTPAPGPGPGPTPTPAPGPGPGPTPTPAPGPGP*G)-3') (nucleic acid)
Unique Ligands	0DX, K

Explore in 3D

4DAQ \| pdb_00004daq	Download File View File

Crystal structure of an intramolecular human telomeric DNA G-quadruplex 21-mer bound by the naphthalene diimide compound BMSG-SH-3

Collie, G.W., Neidle, S.

(2013) J Med Chem 56: 2959-2974

Released	2013-01-16
Method	X-RAY DIFFRACTION 2.754 Å
Organisms	synthetic construct
Macromolecule	DNA (5'-D(GPGPGPTPTPAPGPGPGPTPTPAPGPGPGPTPTPAPGPGP*G)-3') (nucleic acid)
Unique Ligands	K, R8G

Explore in 3D

4E68 \| pdb_00004e68	Download File View File

Unphosphorylated STAT3B core protein binding to dsDNA

Collie, G.W., Parkinson, G.N., Shah, R.

(2013) FEBS Lett 587: 833-839

Released	2013-03-06
Method	X-RAY DIFFRACTION 2.585 Å
Organisms	Mus musculus synthetic construct
Macromolecule	Signal transducer and activator of transcription 3 (protein) DNA (5'-D(TPGPCPAPTPTPTPCPCPCPGPTPAPAPAPTPCPT)-3') (nucleic acid)

Explore in 3D

4R44 \| pdb_00004r44	Download File View File

Racemic crystal structure of a tetramolecular DNA G-quadruplex

Mandal, P.K., Collie, G.W., Kauffmann, B., Huc, I.

(2014) Angew Chem Int Ed Engl 53: 14424-14427

Released	2014-11-12
Method	X-RAY DIFFRACTION 2.695 Å
Organisms	synthetic construct
Macromolecule	5'-D(TPGPGPGPGPT)-3' (nucleic acid)
Unique Ligands	K, NA

Explore in 3D

4R45 \| pdb_00004r45	Download File View File

Racemic crystal structure of a bimolecular DNA G-quadruplex (P-1)

Mandal, P.K., Collie, G.W., Kauffmann, B., Huc, I.

(2014) Angew Chem Int Ed Engl 53: 14424-14427

Released	2014-11-12
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	synthetic construct
Macromolecule	5'-D(GPGPGPGPTPTPTPTPGPGPGPG)-3' (nucleic acid)
Unique Ligands	K

Explore in 3D

4R47 \| pdb_00004r47	Download File View File

Racemic crystal structure of a bimolecular DNA G-quadruplex (P21/n)

Mandal, P.K., Collie, G.W., Kauffmann, B., Huc, I.

(2014) Angew Chem Int Ed Engl 53: 14424-14427

Released	2014-11-12
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	synthetic construct
Macromolecule	5'-D(GPGPGPGPTPTPTPTPGPGPGPG)-3' (nucleic acid)
Unique Ligands	K, MG

Explore in 3D

4R48 \| pdb_00004r48	Download File View File

Racemic crystal structure of a calcium-bound DNA four-way junction

Mandal, P.K., Collie, G.W., Kauffmann, B., Huc, I.

(2014) Angew Chem Int Ed Engl 53: 14424-14427

Released	2014-11-12
Method	X-RAY DIFFRACTION 2.33 Å
Organisms	synthetic construct
Macromolecule	5'-D(CPCPGPGPTPAPCPCPGPG)-3' (nucleic acid)
Unique Ligands	CA, NA

Explore in 3D

4R49 \| pdb_00004r49	Download File View File

Racemic crystal structure of a calcium-bound B-DNA duplex

Mandal, P.K., Collie, G.W., Kauffmann, B., Huc, I.

(2014) Angew Chem Int Ed Engl 53: 14424-14427

Released	2014-11-12
Method	X-RAY DIFFRACTION 1.28 Å
Organisms	synthetic construct
Macromolecule	5'-D(CPCPGPGPTPAPCPCPGPG)-3' (nucleic acid)
Unique Ligands	CA, NA

Explore in 3D

4R4A \| pdb_00004r4a	Download File View File

Racemic crystal structure of a cobalt-bound B-DNA duplex

Mandal, P.K., Collie, G.W., Kauffmann, B., Huc, I.

(2014) Angew Chem Int Ed Engl 53: 14424-14427

Released	2014-11-12
Method	X-RAY DIFFRACTION 1.49 Å
Organisms	synthetic construct
Macromolecule	5'-D(CPCPGPGPTPAPCPCPGPG)-3' (nucleic acid)
Unique Ligands	CO, SPM

Explore in 3D

4R4D \| pdb_00004r4d	Download File View File

Racemic crystal structure of a magnesium-bound B-DNA duplex

Mandal, P.K., Collie, G.W., Kauffmann, B., Huc, I.

(2014) Angew Chem Int Ed Engl 53: 14424-14427

Released	2014-11-12
Method	X-RAY DIFFRACTION 1.29 Å
Organisms	synthetic construct
Macromolecule	5'-D(CPCPGPGPTPAPCPCPGPG)-3' (nucleic acid)
Unique Ligands	MG, NA

Explore in 3D

5ET9 \| pdb_00005et9	Download File View File

Racemic crystal structures of Pribnow box consensus promoter sequence (P21/n)

Mandal, P.K., Collie, G.W., Kauffmann, B., Srivastava, S.C., Huc, I.

(2016) Nucleic Acids Res 44: 5936-5943

Released	2016-05-18
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	synthetic construct
Macromolecule	Pribnow box consensus sequence- template strand (nucleic acid) Pribnow box non-template strand (nucleic acid)
Unique Ligands	BA

Explore in 3D

5EWB \| pdb_00005ewb	Download File View File

Racemic crystal structures of Pribnow box consensus promoter sequence (P21/c)

Mandal, P.K., Collie, G.W., Kauffmann, B., Srivastava, S.C., Huc, I.

(2016) Nucleic Acids Res 44: 5936-5943

Released	2016-05-18
Method	X-RAY DIFFRACTION 1.694 Å
Organisms	synthetic construct
Macromolecule	PRIBNOW BOX CONSENSUS SEQUENCE- NON-TEMPLATE STRAND (nucleic acid) PRIBNOW BOX CONSENSUS SEQUENCE- TEMPLATE STRAND (nucleic acid)

Explore in 3D

5EYQ \| pdb_00005eyq	Download File View File

Racemic crystal structures of Pribnow box consensus promoter sequence (Pnna)

Mandal, P.K., Collie, G.W., Kauffmann, B., Srivastava, S.C., Huc, I.

(2016) Nucleic Acids Res 44: 5936-5943

Released	2016-05-18
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	synthetic construct
Macromolecule	Complementary strand (nucleic acid) Pribnow box template strand (nucleic acid)
Unique Ligands	NA

Explore in 3D

5EZF \| pdb_00005ezf	Download File View File

Racemic crystal structures of Pribnow box consensus promoter sequence (Pbca)

Mandal, P.K., Collie, G.W., Kauffmann, B., Srivastava, S.C., Huc, I.

(2016) Nucleic Acids Res 44: 5936-5943

Released	2016-05-18
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	synthetic construct
Macromolecule	Complementary strand (nucleic acid) Pribnow box template strand (nucleic acid)
Unique Ligands	CA

Explore in 3D

5F26 \| pdb_00005f26	Download File View File

Crystal structures of Pribnow box consensus promoter sequence (P63)

Mandal, P.K., Collie, G.W., Kauffmann, B., Srivastava, S.C., Huc, I.

(2016) Nucleic Acids Res 44: 5936-5943

Released	2016-05-18
Method	X-RAY DIFFRACTION 3 Å
Organisms	synthetic construct
Macromolecule	Complementary strand (nucleic acid) Pribnow box consensus sequence strand (nucleic acid)

Explore in 3D

5J0E \| pdb_00005j0e	Download File View File

Crystal structures of Pribnow box consensus promoter sequence (P32)

Mandal, P.K., Collie, G.W., Kauffmann, B., Huc, I.

(2016) Nucleic Acids Res 44: 5936-5943

Released	2016-05-18
Method	X-RAY DIFFRACTION 2.81 Å
Organisms	synthetic construct
Macromolecule	Complementary sequence (nucleic acid) Pribnow box consensus promoter sequence (nucleic acid)
Unique Ligands	ZN

Explore in 3D

6GN2 \| pdb_00006gn2	Download File View File

Racemic crystal structure of A-DNA duplex formed from d(CCCGGG) in space group R3

Mandal, P.K., Collie, G.W., Kauffmann, B., Huc, I.

(2022) Acta Crystallogr D Struct Biol 78: 709-715

Released	2019-09-11
Method	X-RAY DIFFRACTION 2.48 Å
Organisms	synthetic construct
Macromolecule	DNA (5'-D(CPCPCPGPGPG)-3') (nucleic acid)
Unique Ligands	TMO

Explore in 3D

6GN3 \| pdb_00006gn3	Download File View File

Racemic crystal structure of A-DNA duplex formed from d(CCCGGG) in space group P21/n

Mandal, P.K., Collie, G.W., Kauffmann, B., Huc, I.

(2022) Acta Crystallogr D Struct Biol 78: 709-715

Released	2019-09-11
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	synthetic construct
Macromolecule	DNA (5'-D(CPCPCPGPGPG)-3') (nucleic acid)
Unique Ligands	CL, CO, TMO