RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

235,183 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Structure Author = "Chung, I.Y.W."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 12 Structures.

Refinements

Structure Determination Methodology

experimental (12)

Scientific Name of Source Organism

	Legionella pneumophila subsp. pneumophila str. Philadelphia 1 (4)
	Homo sapiens (2)
	Legionella pneumophila subsp. pneumophila (2)
	Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 (2)
	Yellowtail ascites virus - Y-6 (2)
	Legionella pneumophila str. Paris (1)
	Tellina virus 1 (1)

Taxonomy

	Bacteria (9)
	Riboviria (3)
	Eukaryota (2)

Experimental Method

X-RAY DIFFRACTION (12)

Polymer Entity Type

Protein (12)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (6)
	2.5 - 3.0 (4)
	3.0 - 3.5 (1)

Release Date

	2010 - 2014 (3)
	2015 - 2019 (4)
	2020 - 2024 (5)

Enzyme Classification Name

Hydrolases (3)

Symmetry Type

	Asymmetric (12)
	Cyclic (1)
	Dihedral (1)

AllSelected

1 to 12 of 12 Structures

Page 1 of 1

Sort by

Explore in 3D

3P06 \| pdb_00003p06	Download File View File

Crystal structure of Tellina virus 1 VP4 protease in the form of an intra-molecular(cis)acyl-enzyme complex.

Chung, I.Y.W., Paetzel, M.

(2011) J Biological Chem 286: 12475-12482

Released	2011-02-02
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Tellina virus 1
Macromolecule	VP4 protein (protein)
Unique Ligands	BME, CL, GOL, SO4, URE

Explore in 3D

4IZJ \| pdb_00004izj	Download File View File

Crystal structure of yellowtail ascites virus VP4 protease with a wild-type active site reveals acyl-enzyme complexes and product complexes.

Paetzel, M., Chung, I.Y.W.

(2013) J Biological Chem 288: 13068-13081

Released	2013-02-27
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Yellowtail ascites virus - Y-6
Macromolecule	Yellowtail Ascites Virus (YAV) VP4 protease (protein)
Unique Ligands	BME, GOL, MG

Explore in 3D

4IZK \| pdb_00004izk	Download File View File

Crystal structure of yellowtail ascites virus VP4 protease active site mutant (K674A) reveals both an acyl-enzyme complex and an empty active site

Paetzel, M., Chung, I.Y.W.

(2013) J Biological Chem 288: 13068-13081

Released	2013-02-27
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Yellowtail ascites virus - Y-6
Macromolecule	Yellowtail Ascites Virus (YAV) VP4 protease (protein)
Unique Ligands	BME, MG

Explore in 3D

6CGI \| pdb_00006cgi	Download File View File

Structure of Salmonella Effector SseK3

Chung, I.Y.W., Cygler, M.

(2019) Mol Cell Proteomics 18: 1138-1156

Released	2018-02-28
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
Macromolecule	Type III secretion system effector protein (protein)
Unique Ligands	UDP

Explore in 3D

6DEH \| pdb_00006deh	Download File View File

Structure of LpnE Effector Protein from Legionella pneumophila (sp. Philadelphia)

Voth, K., Chung, I.Y.W., van Straaten, K.E., Cygler, M.

(2019) FEBS J 286: 710-725

Released	2018-12-19
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Legionella pneumophila subsp. pneumophila str. Philadelphia 1
Macromolecule	TPR repeat protein, protein-protein interaction (protein)
Unique Ligands	GOL, NI, PEG

Explore in 3D

6DUS \| pdb_00006dus	Download File View File

Structure of Salmonella Effector SseK3 E258Q mutant

Chung, I.Y.W., Cygler, M.

(2019) Mol Cell Proteomics 18: 1138-1156

Released	2018-07-18
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
Macromolecule	Type III secretion system effector protein (protein)
Unique Ligands	MG, MPD, NAG, TRS, UDP

Explore in 3D

6MCA \| pdb_00006mca	Download File View File

Structure of Legionella Effector AnkH

Cygler, M., Chung, I.Y.W.

(2019) mBio 10:

Released	2019-09-04
Method	X-RAY DIFFRACTION 2.455 Å
Organisms	Legionella pneumophila subsp. pneumophila str. Philadelphia 1
Macromolecule	Ankyrin repeat domain protein (protein)
Unique Ligands	GOL, TLA

Explore in 3D

6WO6 \| pdb_00006wo6	Download File View File

Structure of RavA (lpp0008) E38A/K39A surface entropy reduction mutant

Cygler, M., Chung, I.Y.W.

(2021) Protein Sci 30: 940-955

Released	2021-03-17
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Legionella pneumophila str. Paris
Macromolecule	RavA (protein)

Explore in 3D

7KJ6 \| pdb_00007kj6	Download File View File

Structure of Legionella Effector LegA15

Cygler, M., Chung, I.Y.W.

(2021) Acta Crystallogr D Struct Biol 77: 1535-1542

Released	2021-08-18
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Legionella pneumophila subsp. pneumophila str. Philadelphia 1
Macromolecule	Ankyrin repeat-containing protein (protein)
Unique Ligands	CL, PEG, TRS

Explore in 3D

7UPS \| pdb_00007ups	Download File View File

Structural study of Legionella pneumophila effector DotY (Lpg0294)

Chung, I.Y.W., Cygler, M.

(2022) Acta Crystallogr F Struct Biol Commun 78: 276-280

Released	2022-08-10
Method	X-RAY DIFFRACTION 2.43 Å
Organisms	Legionella pneumophila subsp. pneumophila str. Philadelphia 1
Macromolecule	DotY (Lpg0294) (protein)
Unique Ligands	EDO

Explore in 3D

8SR6 \| pdb_00008sr6	Download File View File

Crystal structure of legAS4 from Legionella pneumophila subsp. pneumophila with histone H3 (3-17)peptide

Xu, C., Chung, I.Y.W., Cygler, M.

(2023) mBio 14: e0165523-e0165523

Released	2024-03-13
Method	X-RAY DIFFRACTION 2.22 Å
Organisms	Homo sapiens Legionella pneumophila subsp. pneumophila
Macromolecule	Eukaryotic huntingtin interacting protein B (protein) Histone 3 peptide (protein)
Unique Ligands	EDO, GOL, K, PEG, SAH

Explore in 3D

8SWI \| pdb_00008swi	Download File View File

Crystal structure of legAS4 from Legionella pneumophila subsp. pneumophila with histone H3 (1-12)peptide

Xu, C., Chung, I.Y.W., Cygler, M.

(2023) mBio 14: e0165523-e0165523

Released	2023-12-27
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens Legionella pneumophila subsp. pneumophila
Macromolecule	Eukaryotic huntingtin interacting protein B (protein) Histone H3 peptided (protein)
Unique Ligands	SAH

1 to 12 of 12 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

3P06 | pdb_00003p06

Crystal structure of Tellina virus 1 VP4 protease in the form of an intra-molecular(cis)acyl-enzyme complex.

4IZJ | pdb_00004izj

Crystal structure of yellowtail ascites virus VP4 protease with a wild-type active site reveals acyl-enzyme complexes and product complexes.

4IZK | pdb_00004izk

Crystal structure of yellowtail ascites virus VP4 protease active site mutant (K674A) reveals both an acyl-enzyme complex and an empty active site

6CGI | pdb_00006cgi

Structure of Salmonella Effector SseK3

6DEH | pdb_00006deh

Structure of LpnE Effector Protein from Legionella pneumophila (sp. Philadelphia)

6DUS | pdb_00006dus

Structure of Salmonella Effector SseK3 E258Q mutant

6MCA | pdb_00006mca

Structure of Legionella Effector AnkH

6WO6 | pdb_00006wo6

Structure of RavA (lpp0008) E38A/K39A surface entropy reduction mutant

7KJ6 | pdb_00007kj6

Structure of Legionella Effector LegA15

7UPS | pdb_00007ups

Structural study of Legionella pneumophila effector DotY (Lpg0294)

8SR6 | pdb_00008sr6

Crystal structure of legAS4 from Legionella pneumophila subsp. pneumophila with histone H3 (3-17)peptide

8SWI | pdb_00008swi

Crystal structure of legAS4 from Legionella pneumophila subsp. pneumophila with histone H3 (1-12)peptide

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

3P06 | pdb_00003p06

4IZJ | pdb_00004izj

4IZK | pdb_00004izk

6CGI | pdb_00006cgi

6DEH | pdb_00006deh

6DUS | pdb_00006dus

6MCA | pdb_00006mca

6WO6 | pdb_00006wo6

7KJ6 | pdb_00007kj6

7UPS | pdb_00007ups

8SR6 | pdb_00008sr6

8SWI | pdb_00008swi