RCSB PDB: Search

8DM1 \| pdb_00008dm1	Download File View File

Cryo-EM structure of SARS-CoV-2 Omicron BA.2 spike protein

Zhu, X., Saville, J.W., Mannar, D., Berezuk, A.M., Cholak, S., Tuttle, K.S., Vahdatihassani, F., Subramaniam, S.

(2023) Cell Rep 42: 111964-111964

Released	2023-01-25
Method	ELECTRON MICROSCOPY 3.04 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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8DM2 \| pdb_00008dm2	Download File View File

Cryo-EM structure of SARS-CoV-2 Omicron BA.2 spike protein (focused refinement of NTD)

Zhu, X., Saville, J.W., Mannar, D., Berezuk, A.M., Cholak, S., Tuttle, K.S., Vahdatihassani, F., Subramaniam, S.

(2023) Cell Rep 42: 111964-111964

Released	2023-01-25
Method	ELECTRON MICROSCOPY 2.91 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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8DM3 \| pdb_00008dm3	Download File View File

Cryo-EM structure of SARS-CoV-2 Omicron BA.2 spike protein in complex with Fab 4A8

Zhu, X., Saville, J.W., Mannar, D., Berezuk, A.M., Cholak, S., Tuttle, K.S., Vahdatihassani, F., Subramaniam, S.

(2023) Cell Rep 42: 111964-111964

Released	2023-01-25
Method	ELECTRON MICROSCOPY 2.37 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Fab 4A8 heavy chain (protein) Fab 4A8 light chain (protein) Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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8DM4 \| pdb_00008dm4	Download File View File

Cryo-EM structure of SARS-CoV-2 Omicron BA.2 spike protein in complex with Fab 4A8 (focused refinement of NTD and 4A8)

Zhu, X., Saville, J.W., Mannar, D., Berezuk, A.M., Cholak, S., Tuttle, K.S., Vahdatihassani, F., Subramaniam, S.

(2023) Cell Rep 42: 111964-111964

Released	2023-01-25
Method	ELECTRON MICROSCOPY 2.45 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Fab 4A8 heavy chain (protein) Fab 4A8 light chain (protein) Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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8DM5 \| pdb_00008dm5	Download File View File

Cryo-EM structure of SARS-CoV-2 Omicron BA.2 spike protein in complex with human ACE2

Zhu, X., Saville, J.W., Mannar, D., Berezuk, A.M., Cholak, S., Tuttle, K.S., Vahdatihassani, F., Subramaniam, S.

(2023) Cell Rep 42: 111964-111964

Released	2023-02-08
Method	ELECTRON MICROSCOPY 2.51 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Processed angiotensin-converting enzyme 2 (protein) Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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8DM6 \| pdb_00008dm6	Download File View File

Cryo-EM structure of SARS-CoV-2 Omicron BA.2 spike protein in complex with human ACE2 (focused refinement of RBD and ACE2)

Zhu, X., Saville, J.W., Mannar, D., Berezuk, A.M., Cholak, S., Tuttle, K.S., Vahdatihassani, F., Subramaniam, S.

(2023) Cell Rep 42: 111964-111964

Released	2023-02-08
Method	ELECTRON MICROSCOPY 2.77 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Processed angiotensin-converting enzyme 2 (protein) Spike glycoprotein (protein)
Unique Ligands	NAG

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8DM7 \| pdb_00008dm7	Download File View File

Cryo-EM structure of SARS-CoV-2 Omicron BA.2 spike protein in complex with mouse ACE2

Zhu, X., Saville, J.W., Mannar, D., Berezuk, A.M., Cholak, S., Tuttle, K.S., Vahdatihassani, F., Subramaniam, S.

(2023) Cell Rep 42: 111964-111964

Released	2023-02-08
Method	ELECTRON MICROSCOPY 2.49 Å
Organisms	Mus musculus Severe acute respiratory syndrome coronavirus 2
Macromolecule	Angiotensin-converting enzyme 2 (protein) Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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8DM8 \| pdb_00008dm8	Download File View File

Cryo-EM structure of SARS-CoV-2 Omicron BA.2 spike protein in complex with mouse ACE2 (focused refinement of RBD and ACE2)

Zhu, X., Saville, J.W., Mannar, D., Berezuk, A.M., Cholak, S., Tuttle, K.S., Vahdatihassani, F., Subramaniam, S.

(2023) Cell Rep 42: 111964-111964

Released	2023-02-08
Method	ELECTRON MICROSCOPY 2.68 Å
Organisms	Mus musculus Severe acute respiratory syndrome coronavirus 2
Macromolecule	Angiotensin-converting enzyme 2 (protein) Spike glycoprotein (protein)
Unique Ligands	NAG

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8DM9 \| pdb_00008dm9	Download File View File

Cryo-EM structure of SARS-CoV-2 Omicron BA.1 spike protein in complex with mouse ACE2

Zhu, X., Saville, J.W., Mannar, D., Berezuk, A.M., Cholak, S., Tuttle, K.S., Vahdatihassani, F., Subramaniam, S.

(2023) Cell Rep 42: 111964-111964

Released	2023-02-08
Method	ELECTRON MICROSCOPY 2.56 Å
Organisms	Mus musculus Severe acute respiratory syndrome coronavirus 2
Macromolecule	Angiotensin-converting enzyme 2 (protein) Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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8DMA \| pdb_00008dma	Download File View File

Cryo-EM structure of SARS-CoV-2 Omicron BA.1 spike protein in complex with mouse ACE2 (focused refinement of RBD and ACE2)

Zhu, X., Saville, J.W., Mannar, D., Berezuk, A.M., Cholak, S., Tuttle, K.S., Vahdatihassani, F., Subramaniam, S.

(2023) Cell Rep 42: 111964-111964

Released	2023-02-08
Method	ELECTRON MICROSCOPY 2.79 Å
Organisms	Mus musculus Severe acute respiratory syndrome coronavirus 2
Macromolecule	Angiotensin-converting enzyme 2 (protein) Spike glycoprotein (protein)
Unique Ligands	NAG

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8SEN \| pdb_00008sen	Download File View File

Cryo-EM Structure of RyR1

Cholak, S., Saville, J.W., Zhu, X., Berezuk, A.M., Tuttle, K.S., Haji-Ghassemi, O., Van Petegem, F., Subramaniam, S.

(2023) Structure 31: 790-800.e4

Released	2023-05-24
Method	ELECTRON MICROSCOPY 3.49 Å
Organisms	Homo sapiens Oryctolagus cuniculus
Macromolecule	Glutathione S-transferase class-mu 26 kDa isozyme,Peptidyl-prolyl cis-trans isomerase FKBP1B (protein) Ryanodine receptor 1 (protein)
Unique Ligands	ZN

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8SEO \| pdb_00008seo	Download File View File

Cryo-EM Structure of RyR1 + ATP-gamma-S

Cholak, S., Saville, J.W., Zhu, X., Berezuk, A.M., Tuttle, K.S., Haji-Ghassemi, O., Van Petegem, F., Subramaniam, S.

(2023) Structure 31: 790-800.e4

Released	2023-05-24
Method	ELECTRON MICROSCOPY 3.92 Å
Organisms	Homo sapiens Oryctolagus cuniculus
Macromolecule	Glutathione S-transferase class-mu 26 kDa isozyme,Peptidyl-prolyl cis-trans isomerase FKBP1B (protein) Ryanodine receptor 1 (protein)
Unique Ligands	AGS, ZN

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8SEP \| pdb_00008sep	Download File View File

Cryo-EM Structure of RyR1 + ADP

Cholak, S., Saville, J.W., Zhu, X., Berezuk, A.M., Tuttle, K.S., Haji-Ghassemi, O., Van Petegem, F., Subramaniam, S.

(2023) Structure 31: 790-800.e4

Released	2023-05-24
Method	ELECTRON MICROSCOPY 3.57 Å
Organisms	Homo sapiens Oryctolagus cuniculus
Macromolecule	Glutathione S-transferase class-mu 26 kDa isozyme,Peptidyl-prolyl cis-trans isomerase FKBP1B (protein) Ryanodine receptor 1 (protein)
Unique Ligands	ADP, ZN

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8SEQ \| pdb_00008seq	Download File View File

Cryo-EM Structure of RyR1 + AMP

Cholak, S., Saville, J.W., Zhu, X., Berezuk, A.M., Tuttle, K.S., Haji-Ghassemi, O., Van Petegem, F., Subramaniam, S.

(2023) Structure 31: 790-800.e4

Released	2023-05-24
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Homo sapiens Oryctolagus cuniculus
Macromolecule	Glutathione S-transferase class-mu 26 kDa isozyme,Peptidyl-prolyl cis-trans isomerase FKBP1B (protein) Ryanodine receptor 1 (protein)
Unique Ligands	AMP, ZN

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8SER \| pdb_00008ser	Download File View File

Cryo-EM Structure of RyR1 + Adenosine

Cholak, S., Saville, J.W., Zhu, X., Berezuk, A.M., Tuttle, K.S., Haji-Ghassemi, O., Van Petegem, F., Subramaniam, S.

(2023) Structure 31: 790-800.e4

Released	2023-05-24
Method	ELECTRON MICROSCOPY 3.42 Å
Organisms	Homo sapiens Oryctolagus cuniculus
Macromolecule	Glutathione S-transferase class-mu 26 kDa isozyme,Peptidyl-prolyl cis-trans isomerase FKBP1B (protein) Ryanodine receptor 1 (protein)
Unique Ligands	ADN, ZN

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8SES \| pdb_00008ses	Download File View File

Cryo-EM Structure of RyR1 + Adenine

Cholak, S., Saville, J.W., Zhu, X., Berezuk, A.M., Tuttle, K.S., Haji-Ghassemi, O., Van Petegem, F., Subramaniam, S.

(2023) Structure 31: 790-800.e4

Released	2023-05-24
Method	ELECTRON MICROSCOPY 3.98 Å
Organisms	Homo sapiens Oryctolagus cuniculus
Macromolecule	Glutathione S-transferase class-mu 26 kDa isozyme,Peptidyl-prolyl cis-trans isomerase FKBP1B (protein) Ryanodine receptor 1 (protein)
Unique Ligands	ADE, ZN

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8SET \| pdb_00008set	Download File View File

Cryo-EM Structure of RyR1 + cAMP

Cholak, S., Saville, J.W., Zhu, X., Berezuk, A.M., Tuttle, K.S., Haji-Ghassemi, O., Van Petegem, F., Subramaniam, S.

(2023) Structure 31: 790-800.e4

Released	2023-05-24
Method	ELECTRON MICROSCOPY 3.42 Å
Organisms	Homo sapiens Oryctolagus cuniculus
Macromolecule	Glutathione S-transferase class-mu 26 kDa isozyme,Peptidyl-prolyl cis-trans isomerase FKBP1B (protein) Ryanodine receptor 1 (protein)
Unique Ligands	CMP, ZN

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8SEU \| pdb_00008seu	Download File View File

Cryo-EM Structure of RyR1 (Local Refinement of TMD)

Cholak, S., Saville, J.W., Zhu, X., Berezuk, A.M., Tuttle, K.S., Haji-Ghassemi, O., Van Petegem, F., Subramaniam, S.

(2023) Structure 31: 790-800.e4

Released	2023-05-24
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Oryctolagus cuniculus
Macromolecule	Ryanodine receptor 1 (protein)
Unique Ligands	ZN

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8SEV \| pdb_00008sev	Download File View File

Cryo-EM Structure of RyR1 + ATP-gamma-S (Local Refinement of TMD)

Cholak, S., Saville, J.W., Zhu, X., Berezuk, A.M., Tuttle, K.S., Haji-Ghassemi, O., Van Petegem, F., Subramaniam, S.

(2023) Structure 31: 790-800.e4

Released	2023-05-24
Method	ELECTRON MICROSCOPY 3.17 Å
Organisms	Oryctolagus cuniculus
Macromolecule	Ryanodine receptor 1 (protein)
Unique Ligands	AGS, ZN

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8SEW \| pdb_00008sew	Download File View File

Cryo-EM Structure of RyR1 + ADP (Local Refinement of TMD)

Cholak, S., Saville, J.W., Zhu, X., Berezuk, A.M., Tuttle, K.S., Haji-Ghassemi, O., Van Petegem, F., Subramaniam, S.

(2023) Structure 31: 790-800.e4

Released	2023-05-24
Method	ELECTRON MICROSCOPY 2.89 Å
Organisms	Oryctolagus cuniculus
Macromolecule	Ryanodine receptor 1 (protein)
Unique Ligands	ADP, ZN

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8SEX \| pdb_00008sex	Download File View File

Cryo-EM Structure of RyR1 + AMP (Local Refinement of TMD)

Cholak, S., Saville, J.W., Zhu, X., Berezuk, A.M., Tuttle, K.S., Haji-Ghassemi, O., Van Petegem, F., Subramaniam, S.

(2023) Structure 31: 790-800.e4

Released	2023-05-24
Method	ELECTRON MICROSCOPY 2.84 Å
Organisms	Oryctolagus cuniculus
Macromolecule	Ryanodine receptor 1 (protein)
Unique Ligands	AMP, ZN

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8SEY \| pdb_00008sey	Download File View File

Cryo-EM Structure of RyR1 + Adenosine (Local Refinement of TMD)

Cholak, S., Saville, J.W., Zhu, X., Berezuk, A.M., Tuttle, K.S., Haji-Ghassemi, O., Van Petegem, F., Subramaniam, S.

(2023) Structure 31: 790-800.e4

Released	2023-05-24
Method	ELECTRON MICROSCOPY 2.99 Å
Organisms	Oryctolagus cuniculus
Macromolecule	Ryanodine receptor 1 (protein)
Unique Ligands	ADN, ZN

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8SEZ \| pdb_00008sez	Download File View File

Cryo-EM Structure of RyR1 + Adenine (Local Refinement of TMD)

Cholak, S., Saville, J.W., Zhu, X., Berezuk, A.M., Tuttle, K.S., Haji-Ghassemi, O., Van Petegem, F., Subramaniam, S.

(2023) Structure 31: 790-800.e4

Released	2023-05-24
Method	ELECTRON MICROSCOPY 3.54 Å
Organisms	Oryctolagus cuniculus
Macromolecule	Ryanodine receptor 1 (protein)
Unique Ligands	ADE, ZN

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8SF0 \| pdb_00008sf0	Download File View File

Cryo-EM Structure of RyR1 + cAMP (Local Refinement of TMD)

Cholak, S., Saville, J.W., Zhu, X., Berezuk, A.M., Tuttle, K.S., Haji-Ghassemi, O., Van Petegem, F., Subramaniam, S.

(2023) Structure 31: 790-800.e4

Released	2023-05-24
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Oryctolagus cuniculus
Macromolecule	Ryanodine receptor 1 (protein)
Unique Ligands	CMP, ZN

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8VKK \| pdb_00008vkk	Download File View File

Cryo-EM structure of SARS-CoV-2 XBB.1.5 spike protein

Zhu, X., Mannar, D., Saville, J., Poloni, C., Bezeruk, A., Tidey, K., Ahmed, S., Tuttle, K., Vahdatihassani, F., Cholak, S., Cook, L., Steiner, T.S., Subramaniam, S.

(2024) Nat Commun 15: 1854-1854

Released	2024-02-14
Method	ELECTRON MICROSCOPY 2.81 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

8DM1 | pdb_00008dm1

8DM2 | pdb_00008dm2

8DM3 | pdb_00008dm3

8DM4 | pdb_00008dm4

8DM5 | pdb_00008dm5

8DM6 | pdb_00008dm6

8DM7 | pdb_00008dm7

8DM8 | pdb_00008dm8

8DM9 | pdb_00008dm9

8DMA | pdb_00008dma

8SEN | pdb_00008sen

8SEO | pdb_00008seo

8SEP | pdb_00008sep

8SEQ | pdb_00008seq

8SER | pdb_00008ser

8SES | pdb_00008ses

8SET | pdb_00008set

8SEU | pdb_00008seu

8SEV | pdb_00008sev

8SEW | pdb_00008sew

8SEX | pdb_00008sex

8SEY | pdb_00008sey

8SEZ | pdb_00008sez

8SF0 | pdb_00008sf0

8VKK | pdb_00008vkk