Potential for clicked streptogramin analogs
Takahashi, Y., Pellegrino, J., Lee, D.J., Fraser, J.S., Seiple, I.B.To be published.
Experimental Data Snapshot
wwPDB Validation 3D Report Full Report
Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L2 | C [auth K] | 271 | Escherichia coli | Mutation(s): 0 Gene Names: rplB, b3317, JW3279 | |
UniProt | |||||
Find proteins for P60422 (Escherichia coli (strain K12)) Explore P60422 Go to UniProtKB: P60422 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P60422 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 4 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L15 | D [auth L] | 144 | Escherichia coli | Mutation(s): 0 Gene Names: rplO | |
UniProt | |||||
Find proteins for P02413 (Escherichia coli (strain K12)) Explore P02413 Go to UniProtKB: P02413 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P02413 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 5 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L4 | E [auth M] | 201 | Escherichia coli | Mutation(s): 0 Gene Names: rplD, ECMG_02584 | |
UniProt | |||||
Find proteins for P60723 (Escherichia coli (strain K12)) Explore P60723 Go to UniProtKB: P60723 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P60723 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 6 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L3 | F [auth N] | 209 | Escherichia coli | Mutation(s): 0 Gene Names: rplC, b3320, JW3282 | |
UniProt | |||||
Find proteins for P60438 (Escherichia coli (strain K12)) Explore P60438 Go to UniProtKB: P60438 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P60438 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 7 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L13 | G [auth O] | 142 | Escherichia coli | Mutation(s): 0 Gene Names: rplM, A1UI_03510 | |
UniProt | |||||
Find proteins for P0AA10 (Escherichia coli (strain K12)) Explore P0AA10 Go to UniProtKB: P0AA10 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0AA10 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 8 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L22 | H [auth P] | 110 | Escherichia coli | Mutation(s): 0 Gene Names: rplV, eryB, b3315, JW3277 | |
UniProt | |||||
Find proteins for P61175 (Escherichia coli (strain K12)) Explore P61175 Go to UniProtKB: P61175 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P61175 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 9 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L32 | I [auth Q] | 56 | Escherichia coli | Mutation(s): 0 Gene Names: rpmF, ECDEC2D_1303 | |
UniProt | |||||
Find proteins for P0A7N4 (Escherichia coli (strain K12)) Explore P0A7N4 Go to UniProtKB: P0A7N4 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0A7N4 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 10 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L34 | J [auth R] | 46 | Escherichia coli | Mutation(s): 0 Gene Names: rpmH | |
UniProt | |||||
Find proteins for P0A7P5 (Escherichia coli (strain K12)) Explore P0A7P5 Go to UniProtKB: P0A7P5 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0A7P5 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
UDF (Subject of Investigation/LOI) Query on UDF | L [auth I] | ~{N}-[(3~{S},6~{S},12~{R},15~{S},16~{R},19~{S},22~{S},24~{R})-12-[2-[(azanylidene-$l^{4}-azanylidene)amino]ethyl]-4,16-dimethyl-24-oxidanyl-2,5,11,14,18,21-hexakis(oxidanylidene)-19-phenyl-3-(phenylmethyl)-17-oxa-1,4,10,13,20-pentazatricyclo[20.4.0.0^{6,10}]hexacosan-15-yl]-3-oxidanyl-pyridine-2-carboxamide C43 H51 N10 O10 GGUGHAXGYRHUOM-RILDDUCRSA-N | |||
UCX (Subject of Investigation/LOI) Query on UCX | K [auth I] | (3R,4R,5E,10E,12E,14S,16R,23S,26aR)-16-fluoro-14-hydroxy-12-methyl-3-(propan-2-yl)-4-(prop-2-yn-1-yl)-3,4,8,9,14,15,16,17,24,25,26,26a-dodecahydro-1H,7H,22H-21,18-(azeno)pyrrolo[2,1-c][1,8,4,19]dioxadiazacyclotetracosine-1,7,22-trione C30 H38 F N3 O6 ZFRIDGLVADEYAZ-CLECSTCYSA-N |
Funding Organization | Location | Grant Number |
---|---|---|
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | GM123159 |
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | GM124149 |
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | GM128656 |