2L4F

NMR structure of the UBA domain of S. cerevisiae Dcn1 bound to ubiquitin

• PDB DOI: https://doi.org/10.2210/pdb2L4F/pdb
• BMRB: 17239

• Classification: PROTEIN BINDING
• Organism(s): Saccharomyces cerevisiae
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2010-10-05 Released: 2011-10-05 
• Deposition Author(s): Burschowsky, D., Mattle, D., Rudolf, F., Peter, M., Wider, G.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 40 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Literature

Structural analysis of the ubiquitin-associated domain (UBA) of yeast Dcn1 in complex with ubiquitin

Burschowsky, D., Rudolf, F., Mattle, D., Peter, M., Wider, G.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 6.92 kDa 
• Atom Count: 477 
• Modelled Residue Count: 57 
• Deposited Residue Count: 59 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Defective in cullin neddylation protein 1	A	59	Saccharomyces cerevisiae	Mutation(s): 0  Gene Names: DCN1, DCN1 YLR128W, L3111, YLR128W
UniProt
Find proteins for Q12395 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q12395  Go to UniProtKB:  Q12395

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 40 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2011-10-05 
Deposition Author(s): Burschowsky, D., Mattle, D., Rudolf, F., Peter, M., Wider, G.

Revision History  

• Version 1.0: 2011-10-05
  Type: Initial release
  
• Version 1.1: 2020-02-05
  Changes: Data collection, Database references, Other
• Version 1.2: 2023-06-14
  Changes: Database references, Other
• Version 1.3: 2024-05-15
  Changes: Data collection, Database references