Ligand validation:9PDA

BEN: BENZAMIDINE

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
9PDA_BEN_C_302	71%	31%	0.083	0.944	0.72	2	-	2	0	0	100%	1
9PDA_BEN_D_301	70%	27%	0.083	0.939	1.02	1.92	1	3	0	0	100%	1
9PDA_BEN_B_303	69%	41%	0.081	0.933	0.6	1.57	-	2	1	0	100%	1
9PDA_BEN_B_301	61%	34%	0.098	0.925	0.55	1.97	-	3	0	0	100%	1
9PDA_BEN_A_301	54%	76%	0.094	0.884	0.51	0.35	-	-	0	0	100%	1
9PDA_BEN_C_301	40%	45%	0.109	0.843	0.71	1.29	-	1	4	0	100%	1
9PDA_BEN_D_306	14%	57%	0.17	0.782	0.68	0.78	-	-	0	0	100%	0.5
9PDA_BEN_D_309	9%	43%	0.16	0.719	0.86	1.26	-	1	1	0	100%	1
9PDA_BEN_B_304	4%	50%	0.275	0.806	0.66	1.15	-	1	2	0	100%	0.7
9PDA_BEN_C_307	4%	53%	0.152	0.596	0.64	0.99	-	1	0	0	100%	1
9PDC_BEN_A_327	97%	62%	0.038	0.985	0.44	0.8	-	-	0	0	100%	1
9PD9_BEN_A_303	96%	48%	0.04	0.987	0.49	1.37	-	1	0	0	100%	1
9PCT_BEN_A_302	86%	61%	0.061	0.972	0.59	0.73	-	-	0	0	100%	1
3UY9_BEN_M_481	100%	34%	0.022	0.996	1.28	1.31	2	1	2	0	100%	1
2Y46_BEN_C_1398	100%	58%	0.023	0.995	0.65	0.78	-	-	1	0	100%	0.5
2Y5Z_BEN_C_1398	99%	35%	0.027	0.994	1.25	1.27	1	1	0	0	100%	0.5
7CJ1_BEN_B_1001	99%	41%	0.029	0.995	1.3	0.93	1	1	0	0	100%	1
3BCX_BEN_B_502	99%	7%	0.03	0.995	3.7	1.16	8	1	2	0	100%	1

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.