Ligand validation:9GBU

MPD: (4S)-2-METHYL-2,4-PENTANEDIOL

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
9GBU_MPD_B_501	51%	96%	0.109	0.893	0.14	0.24	-	-	0	0	100%	1
9GBU_MPD_A_501	44%	83%	0.133	0.903	0.17	0.55	-	-	0	0	100%	1
9GBU_MPD_B_502	26%	96%	0.169	0.87	0.08	0.31	-	-	0	0	100%	1
9GBU_MPD_A_502	15%	89%	0.187	0.827	0.21	0.36	-	-	3	0	100%	1
9GBU_MPD_A_504	3%	90%	0.2	0.65	0.12	0.42	-	-	1	0	100%	1
9GBU_MPD_A_503	1%	78%	0.254	0.663	0.22	0.59	-	-	0	0	100%	1
3SGR_MPD_E_26	99%	71%	0.025	0.994	0.38	0.57	-	-	0	0	100%	1
4X91_MPD_C_410	99%	80%	0.027	0.996	0.24	0.54	-	-	1	0	100%	1
4WCW_MPD_D_203	99%	70%	0.026	0.993	0.3	0.69	-	-	4	0	100%	1
2EIW_MPD_B_1530	99%	61%	0.029	0.995	0.37	0.91	-	-	0	0	100%	1
7ZOB_MPD_F_202	99%	68%	0.029	0.995	0.45	0.61	-	-	0	0	100%	1

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.