UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 8KB7 designated by the Author
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
8KB7_UDP_A_601 | 60% | 30% | 0.181 | 0.969 | 1.26 | 1.52 | 4 | 7 | 0 | 0 | 100% | 1 |
8KB7_UDP_D_601 | 49% | 30% | 0.155 | 0.902 | 1.28 | 1.51 | 4 | 7 | 0 | 0 | 100% | 1 |
8KB7_UDP_C_601 | 48% | 27% | 0.18 | 0.924 | 1.25 | 1.68 | 2 | 11 | 0 | 0 | 100% | 1 |
8KB7_UDP_B_601 | 28% | 18% | 0.244 | 0.898 | 1.35 | 2.18 | 3 | 15 | 1 | 0 | 100% | 1 |
7E9L_UDP_A_603 | 86% | 65% | 0.101 | 0.969 | 0.65 | 0.7 | - | 1 | 0 | 0 | 100% | 1 |
6XFI_UDP_A_601 | 85% | 69% | 0.099 | 0.965 | 0.46 | 0.73 | - | 2 | 0 | 0 | 100% | 1 |
7E9J_UDP_A_603 | 84% | 70% | 0.118 | 0.981 | 0.45 | 0.71 | - | 1 | 0 | 0 | 100% | 1 |
7E9K_UDP_D_603 | 78% | 86% | 0.126 | 0.969 | 0.22 | 0.5 | - | 1 | 0 | 0 | 100% | 1 |
8VH8_UDP_C_704 | 100% | 62% | 0.032 | 0.995 | 0.55 | 0.9 | - | 1 | 0 | 0 | 100% | 1 |
4PHR_UDP_A_301 | 100% | 42% | 0.042 | 0.989 | 0.84 | 1.41 | - | 4 | 0 | 0 | 100% | 1 |
2B69_UDP_A_900 | 100% | 42% | 0.046 | 0.992 | 1.03 | 1.21 | 2 | 4 | 0 | 0 | 100% | 1 |
1GX4_UDP_A_401 | 100% | 32% | 0.046 | 0.991 | 1.68 | 1.03 | 2 | 3 | 0 | 0 | 100% | 1 |
3U2V_UDP_B_270 | 99% | 33% | 0.049 | 0.989 | 1.12 | 1.52 | 2 | 6 | 0 | 0 | 100% | 1 |