Ligand validation:8PD1

DMS: DIMETHYL SULFOXIDE

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
8PD1_DMS_A_506	55%	93%	0.121	0.933	0.3	0.16	-	-	0	0	100%	1
8PD1_DMS_A_502	47%	92%	0.139	0.925	0.33	0.17	-	-	0	0	100%	1
8PD1_DMS_B_501	46%	89%	0.146	0.934	0.31	0.29	-	-	0	0	100%	1
8PD1_DMS_B_507	40%	95%	0.146	0.901	0.28	0.15	-	-	0	0	100%	1
8PD1_DMS_A_504	18%	99%	0.196	0.861	0.25	0.05	-	-	1	0	100%	1
8PD1_DMS_A_501	14%	98%	0.193	0.826	0.24	0.08	-	-	0	0	100%	1
8PD1_DMS_B_508	7%	98%	0.188	0.74	0.29	0.04	-	-	0	0	100%	1
8PD1_DMS_A_507	3%	97%	0.22	0.703	0.31	0.07	-	-	0	0	100%	1
8PJ0_DMS_C_514	97%	93%	0.041	0.994	0.24	0.23	-	-	2	0	100%	1
5SO0_DMS_A_502	91%	94%	0.057	0.986	0.21	0.23	-	-	0	0	100%	1
5SN6_DMS_A_502	90%	92%	0.06	0.986	0.3	0.21	-	-	0	0	100%	1
9GQV_DMS_A_512	88%	92%	0.063	0.983	0.19	0.29	-	-	0	0	100%	1
5SO2_DMS_A_503	87%	98%	0.063	0.982	0.24	0.1	-	-	0	0	100%	1
8DZ9_DMS_B_402	100%	95%	0.017	0.998	0.21	0.21	-	-	1	0	100%	1
4LAW_DMS_B_301	100%	17%	0.019	0.999	2.83	0.76	1	-	4	0	100%	1
6TOV_DMS_A_102	100%	86%	0.021	0.999	0.32	0.35	-	-	0	0	100%	1
3T09_DMS_D_8005	100%	24%	0.025	0.997	2.66	0.56	1	-	0	0	100%	1
4KUP_DMS_A_403	99%	88%	0.027	0.998	0.53	0.1	-	-	0	0	100%	0.92

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.