PGV: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE
PGV is a Ligand Of Interest in 7D5W designated by the RCSB
| Best-fitted instance in this entry | |
| Other instances in this entry |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 7D5W_PGV_C_306 | 70% | 51% | 0.095 | 0.973 | 0.84 | 0.9 | 2 | 3 | 3 | 0 | 94% | 1 |
| 7D5W_PGV_P_305 | 65% | 51% | 0.112 | 0.968 | 0.76 | 1 | 2 | 1 | 3 | 0 | 100% | 1 |
| 7D5W_PGV_A_611 | 63% | 43% | 0.112 | 0.959 | 0.9 | 1.2 | 3 | 4 | 1 | 0 | 100% | 1 |
| 7D5W_PGV_N_612 | 58% | 45% | 0.126 | 0.955 | 0.89 | 1.12 | 3 | 6 | 1 | 0 | 100% | 1 |
| 7D5W_PGV_N_610 | 10% | 45% | 0.216 | 0.826 | 0.96 | 1.06 | 2 | 3 | 3 | 0 | 100% | 1 |
| 7D5W_PGV_P_306 | 3% | 48% | 0.234 | 0.818 | 0.99 | 0.91 | 1 | 2 | 1 | 0 | 61% | 1 |
| 7D5W_PGV_C_307 | 2% | 21% | 0.264 | 0.8 | 1.31 | 1.95 | 2 | 9 | 2 | 0 | 71% | 1 |
| 7D5W_PGV_A_608 | 2% | 70% | 0.264 | 0.806 | 0.41 | 0.58 | - | - | 1 | 0 | 67% | 1 |
| 5X1B_PGV_C_302 | 93% | 49% | 0.047 | 0.982 | 0.92 | 0.93 | 2 | 4 | 0 | 0 | 100% | 1 |
| 6NKN_PGV_A_607 | 93% | 40% | 0.046 | 0.98 | 0.85 | 1.36 | 2 | 5 | 0 | 0 | 100% | 1 |
| 3ASN_PGV_A_522 | 87% | 44% | 0.061 | 0.977 | 0.86 | 1.18 | 2 | 2 | 1 | 0 | 100% | 1 |
| 6NMF_PGV_A_606 | 87% | 49% | 0.061 | 0.975 | 0.93 | 0.92 | 2 | 3 | 0 | 0 | 100% | 1 |
| 9IKG_PGV_A_614 | 83% | 50% | 0.073 | 0.982 | 0.74 | 1.06 | 2 | 2 | 0 | 0 | 100% | 1 |
| 5X1F_PGV_A_608 | 82% | 39% | 0.074 | 0.977 | 0.88 | 1.42 | 3 | 7 | 0 | 0 | 100% | 1 |