Ligand validation:6YDX

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Model completeness	Average occupancy
6YDX_NAG_B_1104	43%	23%	0.095	0.834	1.5	1.67	1	3	0	100%	1
6YDX_NAG_B_1103	40%	42%	0.115	0.849	0.84	1.31	1	2	0	100%	1
6YDX_NAG_A_1105	18%	22%	0.118	0.732	1.92	1.31	2	2	3	100%	1
6YDX_NAG_A_1104	16%	45%	0.109	0.697	0.75	1.26	-	2	3	100%	1
6YDX_NAG_B_1107	12%	52%	0.121	0.68	0.28	1.36	-	2	0	100%	1
6YDX_NAG_A_1103	11%	55%	0.115	0.665	0.89	0.68	1	-	0	100%	1
6YDX_NAG_B_1106	11%	65%	0.118	0.664	0.47	0.69	-	-	0	100%	1
6YDX_NAG_A_1106	6%	32%	0.127	0.619	1.63	1.1	2	2	2	100%	1
6YDX_NAG_A_1107	6%	8%	0.128	0.613	1.89	2.67	2	4	1	100%	1
6YDX_NAG_B_1105	3%	66%	0.157	0.564	0.45	0.67	-	-	0	100%	1
8P0I_NAG_A_1103	69%	72%	0.068	0.912	0.36	0.57	-	-	0	100%	1
5C97_NAG_A_1111	55%	62%	0.069	0.845	0.54	0.71	-	1	0	100%	1
8CGW_NAG_B_1104	49%	66%	0.081	0.836	0.6	0.52	-	-	0	100%	1
8CGP_NAG_A_1102	42%	67%	0.103	0.842	0.34	0.75	-	1	0	100%	1
4Z7I_NAG_A_1105	40%	77%	0.071	0.776	0.34	0.49	-	-	0	100%	1
2QFR_NAG_B_451	100%	63%	0.013	0.998	0.49	0.72	-	1	0	100%	1
5LDS_NAG_C_1003	100%	65%	0.016	0.997	0.54	0.62	-	-	3	100%	1
7DDF_NAG_B_401	100%	84%	0.016	0.996	0.21	0.49	-	-	0	100%	1
2HQM_NAG_A_1301	100%	61%	0.018	0.996	0.59	0.7	-	-	0	100%	1
3THD_NAG_B_702	100%	48%	0.019	0.995	0.71	1.18	-	-	0	100%	1

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

6YDX | pdb_00006ydx