Ligand validation:6PF4

UMP: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
6PF4_UMP_C_600	49%	36%	0.122	0.907	1.31	1.17	2	1	1	0	100%	1
6PF4_UMP_D_600	49%	35%	0.124	0.91	1.3	1.23	2	3	1	0	100%	1
6PF4_UMP_B_600	46%	34%	0.128	0.901	1.33	1.26	3	1	0	0	100%	1
6PF4_UMP_A_600	43%	40%	0.132	0.896	1.07	1.17	3	2	1	0	100%	1
4EB4_UMP_B_401	98%	29%	0.034	0.988	1.11	1.71	2	5	3	0	100%	1
5X67_UMP_B_401	96%	17%	0.039	0.983	1.89	1.66	4	5	0	0	100%	1
6PF5_UMP_C_600	96%	33%	0.042	0.987	1.35	1.31	3	4	0	0	100%	1
4E5O_UMP_A_501	94%	30%	0.044	0.98	0.98	1.78	1	7	0	0	100%	1
5X66_UMP_A_401	92%	14%	0.048	0.979	1.98	1.84	7	5	0	0	100%	1
4XSD_UMP_B_1001	100%	5%	0.018	0.998	3.69	1.69	9	6	4	0	100%	1
4EIL_UMP_B_701	99%	2%	0.025	0.995	1.26	5.29	4	15	7	0	100%	1
4KYA_UMP_A_701	99%	15%	0.028	0.995	1.59	2.09	3	11	0	0	100%	1
2BSY_UMP_A_1257	98%	52%	0.03	0.989	0.79	0.91	-	2	0	0	100%	1
7N6S_UMP_D_201	97%	81%	0.035	0.987	0.3	0.46	-	-	2	0	100%	1

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.