PLP: PYRIDOXAL-5'-PHOSPHATE
PLP is a Ligand Of Interest in 6ED7 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
6ED7_PLP_B_601 | 73% | 46% | 0.15 | 0.988 | 1 | 1.09 | 1 | - | 0 | 0 | 94% | 0.9375 |
6ED7_PLP_H_601 | 69% | 41% | 0.157 | 0.985 | 1.14 | 1.16 | 2 | 2 | 0 | 0 | 94% | 0.9375 |
6ED7_PLP_E_601 | 65% | 34% | 0.164 | 0.977 | 1.01 | 1.56 | 1 | 4 | 2 | 0 | 94% | 0.9375 |
6ED7_PLP_D_601 | 65% | 40% | 0.174 | 0.987 | 1.07 | 1.25 | 1 | 2 | 1 | 0 | 94% | 0.9375 |
6ED7_PLP_A_601 | 53% | 49% | 0.207 | 0.98 | 0.78 | 1.16 | - | 1 | 1 | 0 | 94% | 0.9375 |
6ED7_PLP_C_601 | 52% | 42% | 0.201 | 0.973 | 0.76 | 1.45 | - | 3 | 0 | 0 | 94% | 0.9375 |
6ED7_PLP_F_601 | 49% | 31% | 0.229 | 0.99 | 0.96 | 1.74 | - | 3 | 0 | 0 | 94% | 0.9375 |
6ED7_PLP_G_601 | 42% | 35% | 0.24 | 0.971 | 1.04 | 1.49 | 1 | 4 | 0 | 0 | 94% | 0.9375 |
2BIE_PLP_B_1361 | 100% | 28% | 0.039 | 0.989 | 1.48 | 1.39 | 4 | 3 | 1 | 0 | 100% | 0.9375 |
4NOG_PLP_A_501 | 100% | 38% | 0.042 | 0.992 | 1.24 | 1.18 | 3 | 1 | 0 | 0 | 100% | 1 |
3WQC_PLP_B_402 | 100% | 21% | 0.045 | 0.993 | 1.96 | 1.38 | 4 | 4 | 0 | 0 | 100% | 0.9375 |
4HT3_PLP_B_401 | 100% | 15% | 0.045 | 0.993 | 2.04 | 1.72 | 3 | 5 | 0 | 0 | 100% | 0.9375 |
1JF9_PLP_A_500 | 100% | 12% | 0.047 | 0.994 | 1.28 | 2.78 | 1 | 11 | 0 | 0 | 100% | 0.9375 |