UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 5TVG designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 5TVG_UDP_G_501 | 78% | 75% | 0.113 | 0.957 | 0.33 | 0.65 | - | 1 | 0 | 0 | 100% | 1 |
| 5TVG_UDP_B_501 | 76% | 77% | 0.13 | 0.967 | 0.28 | 0.64 | - | 1 | 1 | 0 | 100% | 1 |
| 5TVG_UDP_D_501 | 75% | 78% | 0.127 | 0.961 | 0.42 | 0.46 | - | - | 0 | 0 | 100% | 1 |
| 5TVG_UDP_F_501 | 72% | 75% | 0.141 | 0.965 | 0.36 | 0.61 | - | 1 | 0 | 0 | 100% | 1 |
| 5TVG_UDP_E_501 | 71% | 70% | 0.138 | 0.959 | 0.51 | 0.65 | - | 1 | 0 | 0 | 100% | 1 |
| 5TVG_UDP_A_501 | 67% | 64% | 0.16 | 0.968 | 0.49 | 0.89 | - | 1 | 0 | 0 | 100% | 1 |
| 5TVG_UDP_C_501 | 66% | 72% | 0.154 | 0.961 | 0.43 | 0.64 | - | 1 | 1 | 0 | 100% | 1 |
| 5TVG_UDP_H_501 | 50% | 67% | 0.163 | 0.914 | 0.53 | 0.74 | - | 2 | 0 | 0 | 100% | 1 |
| 4PHR_UDP_A_301 | 100% | 42% | 0.042 | 0.989 | 0.84 | 1.41 | - | 4 | 0 | 0 | 100% | 1 |
| 2B69_UDP_A_900 | 100% | 42% | 0.046 | 0.992 | 1.03 | 1.21 | 2 | 4 | 0 | 0 | 100% | 1 |
| 1GX4_UDP_A_401 | 100% | 32% | 0.046 | 0.991 | 1.68 | 1.03 | 2 | 3 | 0 | 0 | 100% | 1 |
| 3U2V_UDP_B_270 | 99% | 33% | 0.049 | 0.989 | 1.12 | 1.52 | 2 | 6 | 0 | 0 | 100% | 1 |
| 5GY7_UDP_A_401 | 99% | 40% | 0.049 | 0.989 | 1.09 | 1.23 | 1 | 3 | 0 | 0 | 100% | 1 |
