Ligand validation:5NQD

MGD: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE

MGD is a Ligand Of Interest in 5NQD designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
5NQD_MGD_E_2002	92%	29%	0.092	0.981	1.37	1.47	5	8	0	0	100%	1
5NQD_MGD_G_2001	90%	30%	0.102	0.986	1.3	1.49	4	6	2	0	100%	1
5NQD_MGD_E_2001	89%	23%	0.104	0.982	1.55	1.64	5	6	1	0	100%	1
5NQD_MGD_C_2001	88%	23%	0.107	0.984	1.43	1.75	5	11	0	0	100%	1
5NQD_MGD_G_2002	88%	24%	0.103	0.979	1.59	1.52	6	7	0	0	100%	1
5NQD_MGD_A_2002	88%	24%	0.108	0.983	1.46	1.62	6	8	1	0	100%	1
5NQD_MGD_A_2001	86%	31%	0.121	0.989	1.41	1.35	4	4	0	0	100%	1
5NQD_MGD_C_2002	85%	23%	0.118	0.984	1.68	1.48	7	6	1	0	100%	1
8CCQ_MGD_E_2002	96%	24%	0.08	0.988	1.5	1.64	5	6	2	0	100%	1
8ED4_MGD_E_2002	92%	46%	0.093	0.985	0.88	1.18	2	2	0	0	100%	1
4AAY_MGD_G_2001	63%	25%	0.167	0.962	1.24	1.81	2	11	1	0	100%	1
1G8K_MGD_E_5201	100%	27%	0.03	0.991	1.49	1.47	7	4	2	0	100%	1
3O5A_MGD_A_1804	100%	23%	0.049	0.99	1.22	1.96	3	14	2	0	100%	1
8BQH_MGD_A_1101	99%	44%	0.051	0.99	0.98	1.17	2	3	0	0	100%	1
2E7Z_MGD_A_801	99%	28%	0.056	0.99	1.32	1.57	2	8	1	0	100%	1
8RJA_MGD_B_504	99%	31%	0.048	0.979	1.26	1.48	4	8	2	0	100%	1

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.