Ligand validation:5YPS

1PE: PENTAETHYLENE GLYCOL

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
5YPS_1PE_D_304	51%	67%	0.116	0.907	0.74	0.37	-	-	4	0	100%	1
5YPS_1PE_E_303	50%	67%	0.12	0.909	0.75	0.37	-	-	4	0	100%	1
5YPS_1PE_F_304	39%	69%	0.127	0.867	0.76	0.3	-	-	3	0	100%	1
5YPS_1PE_C_304	34%	69%	0.144	0.87	0.77	0.27	-	-	9	0	100%	1
5YPS_1PE_A_304	34%	67%	0.137	0.857	0.79	0.32	-	-	3	0	100%	1
5YPS_1PE_A_303	30%	67%	0.15	0.857	0.74	0.36	-	-	3	0	100%	1
5YPS_1PE_B_305	27%	69%	0.153	0.846	0.81	0.25	-	-	2	0	100%	1
5YPS_1PE_D_303	25%	68%	0.158	0.846	0.7	0.38	-	-	2	0	100%	1
5YPS_1PE_C_303	24%	67%	0.169	0.859	0.79	0.31	-	-	8	0	100%	1
5YPS_1PE_B_304	22%	66%	0.166	0.838	0.74	0.4	-	-	6	0	100%	1
5YPS_1PE_C_302	21%	68%	0.167	0.834	0.79	0.29	-	-	5	0	100%	1
5YPS_1PE_E_304	17%	67%	0.169	0.813	0.73	0.37	-	-	4	0	100%	1
5YPS_1PE_F_305	14%	66%	0.187	0.819	0.75	0.38	-	-	3	0	100%	1
5YPS_1PE_E_305	13%	70%	0.203	0.828	0.76	0.27	-	-	8	0	100%	1
5YPS_1PE_D_305	11%	65%	0.173	0.767	0.76	0.4	-	-	1	0	100%	1
5YPS_1PE_E_306	11%	69%	0.165	0.752	0.74	0.31	-	-	1	0	100%	1
5YPS_1PE_B_306	10%	70%	0.143	0.698	0.75	0.27	-	-	2	0	100%	1
5YPS_1PE_A_305	8%	69%	0.154	0.684	0.77	0.28	-	-	0	0	100%	1
5YPS_1PE_F_303	7%	70%	0.219	0.777	0.78	0.25	-	-	2	0	100%	1
7C0F_1PE_A_519	99%	62%	0.024	0.995	0.44	0.83	-	-	0	0	100%	1
7PGB_1PE_A_302	99%	77%	0.031	0.994	0.55	0.3	-	-	2	0	100%	1
6V5I_1PE_B_101	99%	67%	0.029	0.989	0.63	0.46	-	-	2	0	100%	1
6AF2_1PE_D_202	98%	70%	0.029	0.986	0.57	0.43	-	-	0	0	100%	1
9PPP_1PE_B_1001	98%	65%	0.034	0.991	0.61	0.56	-	-	4	0	100%	1

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.