GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 5YMX designated by the RCSB
| Best-fitted instance in this entry | |
| Other instances in this entry |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 5YMX_GDP_A_301 | 98% | 32% | 0.036 | 0.992 | 1.2 | 1.48 | 3 | 6 | 2 | 0 | 100% | 1 |
| 5YMX_GDP_B_301 | 90% | 29% | 0.056 | 0.983 | 1.22 | 1.64 | 4 | 6 | 2 | 0 | 100% | 1 |
| 6HJO_GDP_A_200 | 92% | 68% | 0.05 | 0.981 | 0.57 | 0.49 | 1 | - | 0 | 0 | 100% | 1 |
| 6H35_GDP_A_301 | 92% | 27% | 0.051 | 0.98 | 1.19 | 1.76 | 3 | 6 | 0 | 0 | 100% | 1 |
| 6HJH_GDP_A_200 | 66% | 73% | 0.084 | 0.924 | 0.38 | 0.53 | - | - | 0 | 0 | 100% | 1 |
| 1TVK_GDP_B_1500 | 100% | 34% | 0.012 | 0.999 | 1.95 | 0.71 | 1 | 1 | 8 | 0 | 100% | 1 |
| 2CNW_GDP_F_1001 | 100% | 25% | 0.014 | 0.999 | 1.21 | 1.86 | 4 | 8 | 0 | 0 | 100% | 1 |
| 5V9L_GDP_B_201 | 100% | 35% | 0.013 | 0.998 | 0.98 | 1.53 | 1 | 7 | 0 | 0 | 100% | 1 |
| 6EG8_GDP_L_401 | 100% | 28% | 0.013 | 0.999 | 1.16 | 1.75 | 3 | 7 | 3 | 0 | 100% | 1 |
| 3ZY3_GDP_A_1384 | 100% | 28% | 0.014 | 0.998 | 1.13 | 1.74 | 3 | 8 | 1 | 0 | 100% | 1 |
