PLP: PYRIDOXAL-5'-PHOSPHATE
PLP is a Ligand Of Interest in 5YB0 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
5YB0_PLP_K_401 | 72% | 9% | 0.123 | 0.946 | 2.72 | 1.83 | 3 | 6 | 2 | 0 | 100% | 1 |
5YB0_PLP_B_401 | 68% | 7% | 0.152 | 0.965 | 2.77 | 2.13 | 3 | 5 | 4 | 0 | 100% | 1 |
5YB0_PLP_F_401 | 60% | 8% | 0.174 | 0.96 | 2.69 | 2.02 | 3 | 6 | 5 | 0 | 100% | 1 |
5YB0_PLP_C_401 | 58% | 10% | 0.153 | 0.931 | 2.75 | 1.58 | 3 | 5 | 3 | 0 | 100% | 1 |
5YB0_PLP_E_401 | 49% | 6% | 0.199 | 0.948 | 2.79 | 2.28 | 3 | 8 | 3 | 0 | 100% | 1 |
5YB0_PLP_D_401 | 49% | 9% | 0.208 | 0.956 | 2.58 | 1.91 | 3 | 4 | 3 | 0 | 100% | 1 |
5YB0_PLP_I_401 | 44% | 7% | 0.163 | 0.889 | 2.96 | 1.97 | 3 | 5 | 0 | 0 | 100% | 1 |
5YB0_PLP_G_401 | 35% | 10% | 0.24 | 0.931 | 2.49 | 1.87 | 3 | 5 | 1 | 0 | 100% | 1 |
5YB0_PLP_A_401 | 31% | 11% | 0.238 | 0.909 | 2.47 | 1.75 | 3 | 7 | 9 | 0 | 100% | 1 |
5YB0_PLP_H_401 | 28% | 6% | 0.26 | 0.914 | 2.66 | 2.37 | 4 | 6 | 4 | 0 | 100% | 1 |
5YD2_PLP_A_402 | 76% | 7% | 0.127 | 0.963 | 2.34 | 2.52 | 3 | 6 | 1 | 0 | 100% | 1 |
2BIE_PLP_B_1361 | 100% | 28% | 0.039 | 0.989 | 1.48 | 1.39 | 4 | 3 | 1 | 0 | 100% | 0.9375 |
9J0V_PLP_A_301 | 100% | 36% | 0.037 | 0.987 | 0.82 | 1.68 | - | 5 | 0 | 0 | 100% | 0.9375 |
4NOG_PLP_A_501 | 100% | 38% | 0.042 | 0.992 | 1.24 | 1.18 | 3 | 1 | 0 | 0 | 100% | 1 |
3WQC_PLP_B_402 | 100% | 21% | 0.045 | 0.993 | 1.96 | 1.38 | 4 | 4 | 0 | 0 | 100% | 0.9375 |
4HT3_PLP_B_401 | 100% | 15% | 0.045 | 0.993 | 2.04 | 1.72 | 3 | 5 | 0 | 0 | 100% | 0.9375 |