NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG is a Ligand Of Interest in 5Y3M designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
5Y3M_NAG_B_1000 | 50% | 60% | 0.171 | 0.921 | 0.43 | 1.09 | - | 1 | 0 | 0 | 100% | 0.9333 |
5Y3M_NAG_A_1002 | 45% | 67% | 0.19 | 0.924 | 0.37 | 0.87 | - | - | 0 | 0 | 100% | 0.9333 |
5Y3M_NAG_A_1000 | 44% | 52% | 0.181 | 0.908 | 0.48 | 1.36 | - | 2 | 0 | 0 | 100% | 0.9333 |
5Y3M_NAG_A_1001 | 33% | 70% | 0.218 | 0.899 | 0.31 | 0.84 | - | - | 0 | 0 | 100% | 0.9333 |
5Y3M_NAG_B_1004 | 27% | 69% | 0.213 | 0.858 | 0.37 | 0.82 | - | - | 0 | 0 | 100% | 0.9333 |
5Y3M_NAG_B_1003 | 24% | 66% | 0.248 | 0.877 | 0.32 | 0.96 | - | 1 | 0 | 0 | 100% | 0.9333 |
5Y3M_NAG_A_1004 | 19% | 59% | 0.251 | 0.844 | 0.52 | 1.03 | - | 1 | 0 | 0 | 100% | 0.9333 |
5Y3M_NAG_A_1003 | 18% | 63% | 0.298 | 0.889 | 0.38 | 1.02 | - | - | 0 | 0 | 100% | 0.9333 |
5Y3M_NAG_B_1002 | 18% | 69% | 0.224 | 0.811 | 0.31 | 0.86 | - | - | 0 | 0 | 100% | 0.9333 |
5Y3M_NAG_B_1001 | 8% | 62% | 0.356 | 0.824 | 0.44 | 0.99 | - | 1 | 0 | 0 | 100% | 0.9333 |
1OC7_NAG_A_500 | 100% | 60% | 0.04 | 0.991 | 0.61 | 0.9 | - | 1 | 0 | 0 | 100% | 0.9333 |
1OC6_NAG_A_500 | 100% | 67% | 0.041 | 0.988 | 0.46 | 0.8 | - | 1 | 0 | 0 | 100% | 0.9333 |
1UWC_NAG_A_262 | 100% | 54% | 0.046 | 0.99 | 0.83 | 0.93 | - | - | 0 | 0 | 100% | 0.9333 |
6ZE6_NAG_B_703 | 100% | 52% | 0.044 | 0.984 | 0.78 | 1.07 | - | 2 | 0 | 0 | 100% | 0.8667 |
6ZE2_NAG_B_704 | 99% | 56% | 0.042 | 0.979 | 0.73 | 0.95 | - | 1 | 0 | 0 | 100% | 0.9333 |