PLP: PYRIDOXAL-5'-PHOSPHATE
PLP is a Ligand Of Interest in 5XEM designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
5XEM_PLP_A_502 | 97% | 45% | 0.063 | 0.989 | 1.14 | 1 | 2 | - | 1 | 0 | 94% | 0.9375 |
5XEM_PLP_B_401 | 91% | 31% | 0.1 | 0.985 | 1.11 | 1.6 | 2 | 4 | 4 | 0 | 100% | 0.375 |
5XEM_PLP_B_403 | 87% | 32% | 0.101 | 0.984 | 1.46 | 1.26 | 3 | 2 | 0 | 0 | 94% | 0.5625 |
5XEO_PLP_B_401 | 97% | 41% | 0.073 | 0.991 | 1 | 1.29 | - | 3 | 2 | 0 | 100% | 0.9375 |
5XEN_PLP_B_401 | 95% | 29% | 0.079 | 0.984 | 1.11 | 1.73 | 1 | 6 | 3 | 0 | 100% | 0.4219 |
2BIE_PLP_B_1361 | 100% | 28% | 0.039 | 0.989 | 1.48 | 1.39 | 4 | 3 | 1 | 0 | 100% | 0.9375 |
9J0V_PLP_A_301 | 100% | 36% | 0.037 | 0.987 | 0.82 | 1.68 | - | 5 | 0 | 0 | 100% | 0.9375 |
4NOG_PLP_A_501 | 100% | 38% | 0.042 | 0.992 | 1.24 | 1.18 | 3 | 1 | 0 | 0 | 100% | 1 |
3WQC_PLP_B_402 | 100% | 21% | 0.045 | 0.993 | 1.96 | 1.38 | 4 | 4 | 0 | 0 | 100% | 0.9375 |
4HT3_PLP_B_401 | 100% | 15% | 0.045 | 0.993 | 2.04 | 1.72 | 3 | 5 | 0 | 0 | 100% | 0.9375 |