Ligand validation:5VTA

NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose

NAG is a Ligand Of Interest in 5VTA designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Model completeness	Average occupancy
5VTA_NAG_C_804	99%	48%	0.027	0.99	0.33	1.53	-	3	0	100%	1
5VTA_NAG_B_803	99%	40%	0.028	0.991	0.43	1.78	-	1	0	100%	1
5VTA_NAG_A_803	98%	35%	0.03	0.987	0.54	1.94	-	5	0	100%	1
5VTA_NAG_C_802	98%	48%	0.032	0.988	0.45	1.43	-	2	0	100%	1
5VTA_NAG_D_801	98%	46%	0.032	0.988	0.48	1.47	-	1	0	100%	1
5VTA_NAG_C_806	97%	45%	0.034	0.984	0.44	1.56	-	3	0	100%	1
5VTA_NAG_B_804	97%	41%	0.034	0.983	0.68	1.5	1	1	0	100%	1
5VTA_NAG_D_806	97%	52%	0.036	0.985	0.34	1.35	-	1	1	100%	1
5VTA_NAG_C_801	97%	34%	0.037	0.985	0.58	1.96	-	2	0	100%	1
5VTA_NAG_C_805	97%	29%	0.036	0.983	0.52	2.26	-	5	2	100%	1
5VTA_NAG_A_804	96%	50%	0.038	0.982	0.37	1.38	-	2	0	100%	1
5VTA_NAG_B_802	95%	36%	0.042	0.985	0.74	1.68	-	4	0	100%	1
5VTA_NAG_A_801	95%	33%	0.042	0.982	0.79	1.82	1	5	1	100%	1
5VTA_NAG_B_801	95%	30%	0.039	0.977	0.65	2.11	-	5	1	100%	1
5VTA_NAG_C_803	95%	32%	0.042	0.981	0.47	2.14	-	1	0	100%	1
5VTA_NAG_D_804	95%	47%	0.042	0.981	0.59	1.33	-	2	0	100%	1
5VTA_NAG_A_805	94%	46%	0.042	0.977	0.66	1.33	-	2	0	100%	1
5VTA_NAG_A_802	94%	50%	0.044	0.98	0.5	1.26	-	2	0	100%	1
5VTA_NAG_D_803	94%	48%	0.045	0.981	0.56	1.33	-	3	0	100%	1
5VTA_NAG_D_805	93%	43%	0.044	0.973	0.35	1.71	-	3	0	100%	1
5VTA_NAG_D_802	85%	43%	0.05	0.951	0.47	1.63	-	3	0	100%	1
2GBC_NAG_A_1319	18%	42%	0.131	0.752	0.66	1.46	-	1	0	100%	1
2QFR_NAG_B_451	100%	63%	0.013	0.998	0.49	0.72	-	1	0	100%	1
5LDS_NAG_C_1003	100%	65%	0.016	0.997	0.54	0.62	-	-	3	100%	1
7DDF_NAG_B_401	100%	84%	0.016	0.996	0.21	0.49	-	-	0	100%	1
2HQM_NAG_A_1301	100%	61%	0.018	0.996	0.59	0.7	-	-	0	100%	1
3THD_NAG_B_702	100%	48%	0.019	0.995	0.71	1.18	-	-	0	100%	1

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

5VTA | pdb_00005vta

NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose

NAG is a Ligand Of Interest in 5VTA designated by the RCSB