UDX: URIDINE-5'-DIPHOSPHATE-XYLOPYRANOSE
UDX is a Ligand Of Interest in 5VR8 designated by the RCSB
| Best-fitted instance in this entry | |
| Other instances in this entry |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 5VR8_UDX_C_501 | 98% | 34% | 0.032 | 0.991 | 1.07 | 1.5 | 3 | 7 | 0 | 0 | 100% | 1 |
| 5VR8_UDX_D_502 | 96% | 33% | 0.038 | 0.988 | 1.19 | 1.47 | 5 | 7 | 0 | 0 | 100% | 1 |
| 5VR8_UDX_B_502 | 96% | 36% | 0.038 | 0.987 | 1.05 | 1.42 | 1 | 5 | 0 | 0 | 100% | 1 |
| 5VR8_UDX_A_502 | 95% | 34% | 0.041 | 0.987 | 1.06 | 1.51 | 3 | 6 | 0 | 0 | 100% | 1 |
| 5VR8_UDX_F_501 | 95% | 35% | 0.041 | 0.985 | 1.03 | 1.51 | 2 | 6 | 0 | 0 | 100% | 1 |
| 5VR8_UDX_E_502 | 95% | 35% | 0.042 | 0.984 | 1.13 | 1.38 | 5 | 5 | 0 | 0 | 100% | 1 |
| 5VR8_UDX_B_501 | 88% | 35% | 0.058 | 0.981 | 1.14 | 1.38 | 3 | 6 | 1 | 0 | 100% | 1 |
| 5VR8_UDX_A_501 | 81% | 34% | 0.07 | 0.973 | 1.13 | 1.44 | 3 | 6 | 0 | 0 | 100% | 1 |
| 5VR8_UDX_D_501 | 76% | 35% | 0.078 | 0.967 | 1.09 | 1.42 | 3 | 6 | 0 | 0 | 100% | 1 |
| 5VR8_UDX_E_501 | 73% | 35% | 0.082 | 0.96 | 1.13 | 1.38 | 4 | 5 | 0 | 0 | 100% | 1 |
| 3PTZ_UDX_A_501 | 96% | 17% | 0.038 | 0.988 | 1.46 | 2.03 | 5 | 11 | 0 | 0 | 100% | 1 |
| 3PRJ_UDX_D_501 | 89% | 28% | 0.053 | 0.979 | 1.16 | 1.75 | 2 | 9 | 1 | 0 | 100% | 1 |
| 6C58_UDX_E_501 | 79% | 55% | 0.071 | 0.967 | 0.69 | 0.87 | - | - | 0 | 0 | 100% | 1 |
| 6OM8_UDX_F_501 | 92% | 32% | 0.047 | 0.982 | 1.14 | 1.54 | 4 | 7 | 0 | 0 | 100% | 1 |
| 8AVQ_UDX_A_304 | 85% | 72% | 0.058 | 0.97 | 0.39 | 0.54 | - | - | 0 | 0 | 100% | 1 |














