Ligand validation:5VMT

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Model completeness	Average occupancy
5VMT_NAD_B_401	96%	70%	0.04	0.986	0.46	0.53	-	1	0	100%	1
5VMT_NAD_F_401	91%	72%	0.05	0.978	0.34	0.59	-	-	0	100%	1
5VMT_NAD_D_401	89%	74%	0.055	0.977	0.34	0.54	-	1	0	100%	1
5VMT_NAD_H_401	86%	76%	0.06	0.973	0.34	0.5	-	-	1	100%	1
5VMT_NAD_A_401	85%	76%	0.061	0.97	0.38	0.47	-	-	2	100%	1
5VMT_NAD_G_401	59%	75%	0.106	0.926	0.43	0.44	-	-	3	100%	1
5VMT_NAD_C_401	50%	74%	0.116	0.903	0.39	0.49	-	1	3	100%	0.92
5VMT_NAD_E_401	34%	72%	0.131	0.847	0.42	0.52	-	1	3	100%	0.89
9ZAG_NAD_E_403	96%	45%	0.041	0.984	0.98	1.07	3	5	0	100%	1
9Z9C_NAD_N_401	90%	44%	0.054	0.976	1.21	0.9	2	3	0	100%	1
9Y4U_NAD_A_401	84%	43%	0.061	0.966	1.09	1.05	3	5	3	100%	1
9ZAO_NAD_A_401	84%	45%	0.062	0.964	1.14	0.9	3	2	0	100%	1
1DBV_NAD_O_336	100%	19%	0.012	0.999	1.39	1.98	5	12	0	100%	1
1OWB_NAD_A_3000	100%	7%	0.015	0.998	2.36	2.37	10	13	1	100%	1
9QJ0_NAD_A_501	100%	84%	0.015	0.998	0.35	0.36	-	-	2	100%	1
3CMC_NAD_R_408	100%	19%	0.016	0.998	1.58	1.84	4	15	0	100%	1
3UVE_NAD_B_300	100%	29%	0.016	0.998	1.2	1.63	4	14	0	100%	1

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

5VMT | pdb_00005vmt