TYD: THYMIDINE-5'-DIPHOSPHATE
TYD is a Ligand Of Interest in 5TPV designated by the RCSB
| Best-fitted instance in this entry | |
| Other instances in this entry |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 5TPV_TYD_B_201 | 79% | 21% | 0.089 | 0.938 | 1.32 | 1.88 | 5 | 6 | 2 | 0 | 100% | 1 |
| 5TPV_TYD_A_201 | 69% | 20% | 0.104 | 0.92 | 1.32 | 1.9 | 5 | 6 | 3 | 0 | 100% | 1 |
| 5TPV_TYD_C_201 | 18% | 20% | 0.177 | 0.765 | 1.34 | 1.89 | 5 | 6 | 4 | 0 | 100% | 1 |
| 2PAM_TYD_B_140 | 100% | 31% | 0.019 | 0.997 | 1.5 | 1.17 | 1 | 5 | 1 | 0 | 100% | 1 |
| 5TPU_TYD_A_200 | 100% | 21% | 0.022 | 0.995 | 1.32 | 1.86 | 3 | 14 | 0 | 0 | 100% | 1 |
| 3EVO_TYD_A_160 | 100% | 21% | 0.036 | 0.99 | 1.41 | 1.81 | 4 | 7 | 0 | 0 | 100% | 1 |
| 3OTI_TYD_A_377 | 100% | 22% | 0.035 | 0.989 | 1.32 | 1.78 | 3 | 9 | 0 | 0 | 100% | 1 |
| 1PN3_TYD_A_406 | 99% | 53% | 0.04 | 0.991 | 0.96 | 0.74 | 1 | 1 | 5 | 0 | 100% | 1 |
