UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 5TMB designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
5TMB_UDP_A_501 | 77% | 36% | 0.137 | 0.978 | 0.92 | 1.56 | - | 5 | 0 | 0 | 100% | 1 |
6BK2_UDP_A_501 | 98% | 28% | 0.06 | 0.983 | 1.29 | 1.61 | 5 | 8 | 0 | 0 | 100% | 1 |
6BK0_UDP_A_501 | 93% | 16% | 0.078 | 0.971 | 1.55 | 2.1 | 3 | 9 | 2 | 0 | 100% | 1 |
6BK1_UDP_A_501 | 47% | 4% | 0.156 | 0.896 | 1.89 | 3.82 | 7 | 15 | 2 | 0 | 100% | 1 |
6BK3_UDP_A_501 | 43% | 28% | 0.179 | 0.904 | 1.14 | 1.75 | 2 | 9 | 0 | 0 | 100% | 1 |
5TME_UDP_A_501 | 36% | 17% | 0.184 | 0.875 | 1.87 | 1.76 | 6 | 6 | 0 | 0 | 100% | 1 |
4PHR_UDP_A_301 | 100% | 42% | 0.042 | 0.989 | 0.84 | 1.41 | - | 4 | 0 | 0 | 100% | 1 |
2B69_UDP_A_900 | 100% | 42% | 0.046 | 0.992 | 1.03 | 1.21 | 2 | 4 | 0 | 0 | 100% | 1 |
1GX4_UDP_A_401 | 100% | 32% | 0.046 | 0.991 | 1.68 | 1.03 | 2 | 3 | 0 | 0 | 100% | 1 |
3U2V_UDP_B_270 | 99% | 33% | 0.049 | 0.989 | 1.12 | 1.52 | 2 | 6 | 0 | 0 | 100% | 1 |
5GY7_UDP_A_401 | 99% | 40% | 0.049 | 0.989 | 1.09 | 1.23 | 1 | 3 | 0 | 0 | 100% | 1 |