5OBM | pdb_00005obm


LLL: (2R,3R,4R,5R)-2-((1S,2S,3R,4S,6R)-4,6-DIAMINO-3-((2R,3R,6S)-3-AMINO-6-(AMINOMETHYL)-TETRAHYDRO-2H-PYRAN-2-YLOXY)-2-HYDR OXYCYCLOHEXYLOXY)-5-METHYL-4-(METHYLAMINO)-TETRAHYDRO-2H-PYRAN-3,5-DIOL

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LLL is a Ligand Of Interest in 5OBM designated by the RCSB
Best-fitted instance in this entry
Other instances in this entry
Best-fitted instance in this entry
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
5OBM_LLL_5_4157 68% 56% 0.092 0.9570.32 1.17 - 210100%1
5OBM_LLL_5_4161 68% 52% 0.084 0.9420.39 1.28 - 300100%1
5OBM_LLL_1_3993 66% 49% 0.097 0.9540.29 1.53 - 510100%0.97
5OBM_LLL_1_3991 66% 64% 0.101 0.960.32 0.86 - 330100%0.94
5OBM_LLL_5_4154 61% 68% 0.108 0.9510.34 0.72 - -30100%0.92
5OBM_LLL_5_4159 61% 58% 0.112 0.9560.34 1.08 - 310100%0.9
5OBM_LLL_1_3989 61% 48% 0.103 0.940.39 1.46 - 320100%1
5OBM_LLL_L3_404 60% 52% 0.097 0.9290.32 1.36 - 330100%1
5OBM_LLL_5_4151 59% 48% 0.108 0.9430.37 1.49 - 230100%0.99
5OBM_LLL_l3_412 58% 38% 0.104 0.9310.38 1.93 - 340100%0.94
5OBM_LLL_1_3994 58% 55% 0.116 0.9490.32 1.19 - 310100%0.97
5OBM_LLL_5_4168 56% 43% 0.11 0.9310.35 1.71 - 440100%0.91
5OBM_LLL_5_4170 55% 46% 0.122 0.9430.37 1.57 - 210100%0.76
5OBM_LLL_2_2043 54% 66% 0.126 0.9490.27 0.83 - 450100%0.96
5OBM_LLL_6_2171 53% 57% 0.114 0.9230.29 1.15 - 120100%0.94
5OBM_LLL_5_4167 53% 60% 0.106 0.9070.32 1.03 - 200100%1
5OBM_LLL_6_2170 53% 54% 0.118 0.9270.28 1.3 - 210100%1
5OBM_LLL_6_2166 53% 56% 0.131 0.9480.31 1.16 - 430100%0.88
5OBM_LLL_5_4165 51% 57% 0.121 0.9260.38 1.06 - 200100%0.93
5OBM_LLL_1_3990 50% 40% 0.129 0.9330.35 1.85 - 120100%0.98
5OBM_LLL_5_4160 49% 40% 0.131 0.9310.34 1.88 - 340100%0.78
5OBM_LLL_6_2169 48% 64% 0.139 0.9390.27 0.91 - 250100%0.94
5OBM_LLL_8_221 48% 41% 0.123 0.9120.37 1.78 - 290100%0.88
5OBM_LLL_5_4172 48% 50% 0.125 0.9140.35 1.43 - 350100%0.86
5OBM_LLL_5_4152 47% 48% 0.126 0.9140.36 1.52 - 230100%0.82
5OBM_LLL_6_2164 47% 42% 0.135 0.9260.24 1.85 - 200100%0.94
5OBM_LLL_6_2167 47% 37% 0.124 0.9070.35 2.01 - 560100%0.97
5OBM_LLL_1_3997 46% 54% 0.095 0.8530.31 1.25 - 320100%0.96
5OBM_LLL_6_2168 45% 53% 0.137 0.9230.28 1.34 - 350100%1
5OBM_LLL_6_2165 42% 55% 0.141 0.9120.35 1.16 - 200100%0.86
5OBM_LLL_3_220 41% 48% 0.145 0.9120.34 1.52 - 330100%0.94
5OBM_LLL_1_3992 40% 54% 0.155 0.9280.28 1.27 - 230100%0.89
5OBM_LLL_1_4002 40% 35% 0.118 0.8640.36 2.14 - 360100%1
5OBM_LLL_5_4153 40% 41% 0.152 0.9210.33 1.81 - 220100%0.94
5OBM_LLL_5_4171 40% 60% 0.144 0.9060.32 1.02 - 140100%0.9
5OBM_LLL_1_4004 39% 57% 0.147 0.9060.35 1.09 - 100100%0.84
5OBM_LLL_1_4001 37% 58% 0.131 0.8710.31 1.1 - 210100%1
5OBM_LLL_2_2044 37% 48% 0.154 0.9080.32 1.53 - 420100%1
5OBM_LLL_5_4162 37% 63% 0.124 0.8570.33 0.87 - 140100%1
5OBM_LLL_7_231 37% 36% 0.143 0.8880.33 2.08 - 760100%0.83
5OBM_LLL_1_4003 35% 51% 0.171 0.9270.32 1.42 - 310100%0.78
5OBM_LLL_5_4156 35% 52% 0.163 0.9130.33 1.35 - 420100%0.83
5OBM_LLL_5_4164 34% 38% 0.186 0.9480.32 1.97 - 310100%0.68
5OBM_LLL_5_4169 34% 49% 0.17 0.9210.28 1.54 - 410100%0.72
5OBM_LLL_8_222 33% 66% 0.155 0.8920.3 0.82 - 1120100%0.88
5OBM_LLL_5_4166 33% 56% 0.165 0.9050.29 1.18 - 210100%0.75
5OBM_LLL_4_224 32% 49% 0.132 0.8450.34 1.49 - 2100100%0.9
5OBM_LLL_5_4163 31% 59% 0.104 0.7940.31 1.07 - 320100%1
5OBM_LLL_5_4158 29% 38% 0.195 0.9370.33 2.01 - 520100%0.71
5OBM_LLL_5_4155 29% 58% 0.181 0.9120.33 1.06 - 220100%0.91
5OBM_LLL_6_2176 29% 52% 0.2 0.9430.35 1.33 - 310100%0.8
5OBM_LLL_1_3995 26% 36% 0.136 0.820.31 2.12 - 200100%0.99
5OBM_LLL_1_3996 26% 62% 0.178 0.8890.31 0.93 - 220100%0.88
5OBM_LLL_5_4173 25% 58% 0.16 0.8550.28 1.13 - 330100%0.82
5OBM_LLL_6_2173 24% 56% 0.183 0.8870.34 1.14 - 330100%0.89
5OBM_LLL_1_3998 24% 68% 0.174 0.8710.28 0.76 - 110100%0.88
5OBM_LLL_1_4000 24% 35% 0.195 0.9050.31 2.15 - 530100%0.8
5OBM_LLL_1_3999 23% 61% 0.206 0.9180.3 0.98 - 350100%0.72
5OBM_LLL_6_2172 22% 56% 0.189 0.880.32 1.18 - 320100%0.91
5OBM_LLL_5_4177 19% 40% 0.229 0.930.34 1.87 - 630100%0.67
5OBM_LLL_5_4175 17% 49% 0.233 0.920.34 1.49 - 330100%0.67
5OBM_LLL_5_4174 17% 44% 0.243 0.9350.39 1.64 - 450100%0.64
5OBM_LLL_6_2175 16% 50% 0.213 0.8840.36 1.41 - 220100%0.68
5OBM_LLL_7_233 16% 62% 0.188 0.8380.31 0.96 - 230100%0.66
5OBM_LLL_7_232 14% 62% 0.23 0.8940.33 0.91 - 250100%0.72
5OBM_LLL_2_2045 13% 47% 0.203 0.8350.37 1.56 - 440100%0.92
5OBM_LLL_5_4176 13% 52% 0.243 0.9010.33 1.33 - 320100%0.68
5OBM_LLL_5_4178 12% 63% 0.235 0.8810.34 0.89 - 150100%0.67
5OBM_LLL_6_2174 7% 51% 0.284 0.9030.38 1.33 - 300100%0.75
4LF9_LLL_A_1743 78% 34% 0.074 0.9681.35 1.27 3 620100%1
4V55_LLL_AA_1661 74% 14% 0.073 0.952.58 1.32 13 400100%1
4V53_LLL_CA_2062 73% 15% 0.075 0.952.53 1.27 14 300100%1
4LF4_LLL_A_1749 67% 30% 0.094 0.9551.45 1.38 6 510100%1
6MN1_LLL_A_302 65% 41% 0.095 0.9471.05 1.15 2 300100%1