YDZ: [[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-sulfanyl-phosphoryl] [(2~{R},3~{R},4~{R},5~{R})-5-(2-azanyl-7-methyl-6-oxidanyl-purin-7-ium-9-yl)-4-methoxy-3-oxidanyl-oxolan-2-yl]methyl hydrogen phosphate
YDZ is a Ligand Of Interest in 5M83 designated by the RCSB
| Best-fitted instance in this entry | |
| Other instances in this entry |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with same target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 5M83_YDZ_A_301 | 55% | 34% | 0.078 | 0.943 | 0.92 | 1.65 | 2 | 7 | 1 | 0 | 65% | 1 |
| 5M83_YDZ_B_300 | 10% | 37% | 0.137 | 0.765 | 0.85 | 1.56 | - | 6 | 0 | 0 | 65% | 1 |
| 5M84_YDZ_A_301 | 53% | 33% | 0.079 | 0.936 | 0.9 | 1.69 | 1 | 8 | 0 | 0 | 65% | 1 |
