Ligand validation:5LDS

NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose

NAG is a Ligand Of Interest in 5LDS designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Model completeness	Average occupancy
5LDS_NAG_C_1003	100%	66%	0.016	0.997	0.54	0.62	-	-	3	100%	1
5LDS_NAG_A_1013	100%	64%	0.018	0.996	0.48	0.73	-	-	0	100%	1
5LDS_NAG_C_1006	100%	61%	0.02	0.996	0.43	0.88	-	1	1	100%	1
5LDS_NAG_A_1016	100%	66%	0.021	0.995	0.51	0.62	-	-	2	100%	1
5LDS_NAG_B_1007	100%	63%	0.022	0.994	0.47	0.77	-	-	0	100%	1
5LDS_NAG_C_1002	100%	66%	0.022	0.994	0.53	0.63	-	-	0	100%	1
5LDS_NAG_D_1014	100%	61%	0.023	0.995	0.48	0.84	-	1	0	100%	1
5LDS_NAG_A_1002	100%	66%	0.024	0.994	0.49	0.65	-	-	0	100%	1
5LDS_NAG_B_1002	100%	65%	0.024	0.993	0.49	0.69	-	-	0	100%	1
5LDS_NAG_B_1011	100%	58%	0.03	0.993	0.55	0.9	-	1	2	100%	1
5LDS_NAG_D_1012	100%	64%	0.028	0.991	0.52	0.7	-	-	1	100%	1
5LDS_NAG_B_1010	100%	64%	0.03	0.991	0.51	0.71	-	-	1	100%	1
5LDS_NAG_C_1010	100%	55%	0.031	0.991	0.62	0.96	-	-	2	100%	1
5LDS_NAG_D_1013	100%	62%	0.032	0.987	0.47	0.84	-	-	0	100%	1
5LDS_NAG_D_1019	100%	62%	0.034	0.989	0.58	0.74	-	-	2	100%	1
5LDS_NAG_C_1009	99%	52%	0.031	0.989	0.59	1.12	-	2	1	93%	1
5Z65_NAG_A_1019	91%	39%	0.069	0.961	0.82	1.43	-	2	0	100%	1
5LG6_NAG_A_1006	85%	51%	0.069	0.939	0.45	1.29	-	1	0	100%	1
4F5C_NAG_B_1012	82%	57%	0.065	0.923	0.56	0.92	-	-	0	100%	1
4NAQ_NAG_A_1003	79%	44%	0.073	0.92	0.36	1.64	-	5	0	100%	1
4FKK_NAG_A_1023	74%	54%	0.076	0.908	0.65	0.96	-	-	0	100%	1
2QFR_NAG_B_451	100%	64%	0.013	0.998	0.49	0.72	-	1	0	100%	1
7DDF_NAG_B_401	100%	84%	0.016	0.996	0.21	0.49	-	-	0	100%	1
2HQM_NAG_A_1301	100%	62%	0.018	0.996	0.59	0.7	-	-	0	100%	1
3THD_NAG_C_704	100%	59%	0.019	0.994	0.45	0.96	-	-	0	100%	1
3H0C_NAG_A_794	100%	53%	0.021	0.995	0.61	1.08	-	1	0	100%	1

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

5LDS | pdb_00005lds

NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose

NAG is a Ligand Of Interest in 5LDS designated by the RCSB