Ligand validation:5JDF

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Model completeness	Average occupancy
5JDF_MYS_A_411	23%	63%	0.208	0.838	0.35	0.88	-	-	1	100%	1
5JDF_MYS_A_412	11%	66%	0.191	0.808	0.36	0.77	-	-	1	53%	1
5JDF_MYS_A_413	6%	31%	0.194	0.689	0.64	1.95	-	3	2	73%	1
5JDF_MYS_A_410	4%	66%	0.209	0.655	0.35	0.79	-	-	1	60%	1
5JDF_MYS_A_408	0%	72%	0.384	0.477	0.38	0.57	-	-	0	33%	1
5JDF_MYS_A_409	0%	72%	0.319	0.396	0.44	0.5	-	-	0	33%	1
3V5U_MYS_A_720	90%	64%	0.065	0.965	0.45	0.78	-	-	3	93%	1
5HYA_MYS_A_413	35%	92%	0.11	0.834	0.1	0.35	-	-	1	80%	1
5HXE_MYS_A_410	22%	64%	0.167	0.784	0.38	0.84	-	-	0	100%	1
5HXH_MYS_A_405	22%	66%	0.141	0.855	0.52	0.63	-	-	1	47%	1
5HXC_MYS_A_415	21%	61%	0.18	0.793	0.53	0.8	-	-	1	100%	1
6GAC_MYS_A_308	98%	72%	0.042	0.972	0.08	0.85	-	-	0	100%	1
6GA4_MYS_A_308	98%	71%	0.044	0.973	0.07	0.89	-	-	0	100%	1
6GA5_MYS_A_308	98%	72%	0.043	0.972	0.08	0.85	-	-	0	100%	1
6GAI_MYS_A_308	98%	72%	0.043	0.972	0.08	0.85	-	-	0	100%	1
6GAB_MYS_A_308	97%	72%	0.045	0.972	0.08	0.85	-	-	0	100%	1

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

5JDF | pdb_00005jdf