Ligand validation:5GYD

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
5GYD_PEE_B_301	74%	48%	0.13	0.967	0.95	0.95	2	4	33	0	100%	1
5GYD_PEE_A_301	74%	48%	0.129	0.965	0.95	0.95	2	4	13	0	100%	1
5GYD_PEE_C_301	72%	48%	0.134	0.963	0.95	0.95	2	4	25	0	100%	1
5GYD_PEE_D_301	41%	43%	0.128	0.971	1.03	1.08	1	2	0	0	31%	1
5GYD_PEE_D_302	29%	43%	0.171	0.96	1.03	1.07	1	2	0	0	31%	1
6A9J_PEE_A_401	98%	44%	0.052	0.983	1.08	0.97	3	1	6	0	100%	1
2BCC_PEE_E_198	93%	2%	0.077	0.985	2.57	4.34	9	18	4	1	96%	1
4D6U_PEE_C_505	84%	40%	0.103	0.98	1.27	0.96	4	2	0	1	96%	1
4D6T_PEE_P_505	79%	39%	0.117	0.975	1.35	0.95	4	1	1	1	96%	1
3H1L_PEE_C_2007	66%	41%	0.14	0.956	1.42	0.79	6	2	0	0	96%	1

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

5GYD | pdb_00005gyd