ADP: ADENOSINE-5'-DIPHOSPHATE
ADP is a Ligand Of Interest in 5DM3 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
5DM3_ADP_B_501 | 46% | 37% | 0.186 | 0.923 | 1.01 | 1.44 | 2 | 3 | 0 | 0 | 100% | 1 |
5DM3_ADP_E_501 | 33% | 43% | 0.229 | 0.91 | 0.97 | 1.24 | 1 | 3 | 0 | 0 | 100% | 1 |
5DM3_ADP_A_501 | 30% | 39% | 0.212 | 0.877 | 0.92 | 1.47 | 1 | 4 | 0 | 0 | 100% | 1 |
5DM3_ADP_D_501 | 30% | 43% | 0.222 | 0.886 | 0.89 | 1.29 | 1 | 3 | 0 | 0 | 100% | 1 |
5DM3_ADP_C_501 | 24% | 40% | 0.215 | 0.845 | 1 | 1.35 | 1 | 3 | 2 | 0 | 100% | 1 |
5DM3_ADP_F_501 | 23% | 38% | 0.249 | 0.873 | 0.95 | 1.47 | 1 | 3 | 1 | 0 | 100% | 1 |
3KB1_ADP_A_301 | 100% | 22% | 0.021 | 0.996 | 2.06 | 1.21 | 6 | 4 | 1 | 0 | 100% | 1 |
5GZA_ADP_A_401 | 100% | 2% | 0.019 | 0.997 | 3.36 | 3.39 | 13 | 11 | 1 | 0 | 100% | 1 |
5KHW_ADP_A_1201 | 100% | 41% | 0.023 | 0.995 | 1.1 | 1.2 | 1 | 2 | 0 | 0 | 100% | 1 |
8VZA_ADP_A_603 | 100% | 37% | 0.024 | 0.995 | 0.96 | 1.51 | 1 | 5 | 0 | 0 | 100% | 1 |
1PHP_ADP_A_396 | 100% | 24% | 0.026 | 0.995 | 1.29 | 1.8 | 3 | 11 | 1 | 0 | 100% | 1 |