GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 5D3Q designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 5D3Q_GDP_A_801 | 98% | 39% | 0.065 | 0.989 | 1.1 | 1.28 | 2 | 2 | 0 | 0 | 100% | 1 |
| 5D3Q_GDP_B_801 | 98% | 34% | 0.066 | 0.985 | 1.18 | 1.42 | 3 | 6 | 3 | 0 | 100% | 1 |
| 2X2E_GDP_A_1744 | 93% | 39% | 0.085 | 0.979 | 1.13 | 1.24 | 3 | 4 | 0 | 0 | 100% | 1 |
| 2X2F_GDP_A_1747 | 89% | 39% | 0.099 | 0.979 | 1.05 | 1.33 | 2 | 5 | 0 | 0 | 100% | 1 |
| 1RRG_GDP_A_183 | 100% | 17% | 0.036 | 0.997 | 2.05 | 1.56 | 7 | 3 | 0 | 0 | 100% | 1 |
| 2CXX_GDP_B_2401 | 100% | 29% | 0.031 | 0.989 | 1.26 | 1.57 | 1 | 3 | 0 | 0 | 100% | 1 |
| 5YMX_GDP_A_301 | 100% | 54% | 0.038 | 0.994 | 0.92 | 0.85 | 1 | - | 2 | 0 | 100% | 1 |
| 5KY2_GDP_A_403 | 100% | 48% | 0.036 | 0.989 | 0.98 | 1.04 | 1 | 1 | 0 | 0 | 100% | 1 |
| 8CNJ_GDP_B_201 | 100% | 56% | 0.04 | 0.992 | 0.91 | 0.77 | 1 | - | 0 | 0 | 100% | 1 |
