NMY: NEOMYCIN
NMY is a Ligand Of Interest in 4V9C designated by the RCSB
| Best-fitted instance in this entry | |
| Other instances in this entry |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 4V9C_NMY_DA_3188 | 54% | 10% | 0.108 | 0.907 | 2.24 | 2.03 | 13 | 24 | 21 | 0 | 100% | 0.79 |
| 4V9C_NMY_DA_3186 | 49% | 7% | 0.115 | 0.894 | 2.4 | 2.39 | 12 | 15 | 25 | 0 | 100% | 0.66 |
| 4V9C_NMY_AA_1655 | 47% | 55% | 0.104 | 0.866 | 0.56 | 0.97 | - | 4 | 35 | 0 | 100% | 0.93 |
| 4V9C_NMY_DA_3185 | 45% | 12% | 0.12 | 0.882 | 2.36 | 1.72 | 12 | 14 | 22 | 0 | 100% | 0.73 |
| 4V9C_NMY_CA_1672 | 39% | 58% | 0.152 | 0.907 | 0.53 | 0.89 | - | 2 | 10 | 0 | 100% | 0.73 |
| 4V9C_NMY_DA_3189 | 37% | 8% | 0.138 | 0.873 | 2.24 | 2.32 | 11 | 23 | 13 | 0 | 100% | 0.64 |
| 4V9C_NMY_DA_3187 | 30% | 14% | 0.106 | 0.784 | 2.34 | 1.51 | 11 | 13 | 6 | 0 | 100% | 0.83 |
| 4V9C_NMY_BA_3166 | 28% | 9% | 0.156 | 0.859 | 2.21 | 2.22 | 11 | 16 | 16 | 0 | 100% | 0.73 |
| 4V9C_NMY_BA_3162 | 24% | 55% | 0.153 | 0.831 | 0.49 | 1.05 | - | 5 | 20 | 0 | 100% | 0.78 |
| 4V9C_NMY_AA_1656 | 23% | 11% | 0.159 | 0.832 | 2.31 | 1.88 | 12 | 20 | 22 | 0 | 100% | 0.74 |
| 4V9C_NMY_BA_3161 | 22% | 55% | 0.17 | 0.847 | 0.49 | 1.03 | - | 4 | 24 | 0 | 100% | 0.71 |
| 4V9C_NMY_DA_3184 | 22% | 49% | 0.151 | 0.811 | 0.57 | 1.26 | - | 5 | 22 | 0 | 100% | 0.73 |
| 4V9C_NMY_BA_3167 | 20% | 10% | 0.149 | 0.795 | 2.32 | 1.97 | 11 | 14 | 9 | 0 | 100% | 0.73 |
| 4V9C_NMY_BA_3163 | 19% | 7% | 0.187 | 0.855 | 2.34 | 2.46 | 10 | 28 | 14 | 0 | 100% | 0.64 |
| 4V9C_NMY_BA_3164 | 16% | 7% | 0.147 | 0.768 | 2.29 | 2.44 | 11 | 26 | 3 | 0 | 100% | 0.73 |
| 4V9C_NMY_BA_3165 | 15% | 53% | 0.181 | 0.816 | 0.5 | 1.12 | - | 5 | 41 | 0 | 100% | 0.7 |
| 4V9C_NMY_DA_3190 | 7% | 7% | 0.254 | 0.839 | 2.29 | 2.56 | 10 | 25 | 53 | 0 | 100% | 0.57 |
| 4V9C_NMY_AA_1657 | 4% | 11% | 0.336 | 0.916 | 2.35 | 1.87 | 12 | 18 | 19 | 0 | 100% | 0.59 |
| 4V57_NMY_CA_1601 | 39% | 26% | 0.132 | 0.873 | 1.84 | 1.18 | 11 | 5 | 0 | 0 | 100% | 0.9 |
| 4V52_NMY_AA_1601 | 20% | 26% | 0.139 | 0.783 | 1.85 | 1.18 | 11 | 5 | 3 | 0 | 100% | 0.9 |
| 4W29_NMY_CA_1601 | 98% | 55% | 0.035 | 0.991 | 0.56 | 0.97 | - | 4 | 43 | 0 | 100% | 0.73 |
| 2A04_NMY_A_17 | 88% | 28% | 0.064 | 0.984 | 1.82 | 1.12 | 9 | 5 | 1 | 0 | 100% | 1 |
| 6P08_NMY_A_307 | 79% | 7% | 0.066 | 0.952 | 3.73 | 1.09 | 14 | 3 | 2 | 0 | 100% | 1 |
| 6NMM_NMY_A_800 | 79% | 7% | 0.069 | 0.956 | 3.87 | 1.07 | 15 | 3 | 4 | 0 | 100% | 1 |
| 6P06_NMY_A_305 | 79% | 6% | 0.069 | 0.955 | 3.82 | 1.22 | 15 | 5 | 4 | 0 | 100% | 1 |














