Ligand validation:4Y28

CLA: CHLOROPHYLL A

CLA is a Ligand Of Interest in 4Y28 designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
4Y28_CLA_B_1235	69%	7%	0.094	0.955	2.36	2.53	21	24	10	1	100%	1
4Y28_CLA_B_1229	66%	7%	0.107	0.963	2.36	2.49	23	26	6	1	100%	1
4Y28_CLA_B_1203	63%	7%	0.111	0.958	2.33	2.48	23	24	2	1	100%	1
4Y28_CLA_A_1138	63%	7%	0.112	0.957	2.39	2.38	22	25	8	1	100%	1
4Y28_CLA_A_1013	61%	7%	0.115	0.955	2.35	2.46	23	25	8	1	100%	1
4Y28_CLA_B_1230	61%	5%	0.098	0.95	2.46	2.72	19	24	8	1	89%	1
4Y28_CLA_A_1140	61%	7%	0.116	0.953	2.39	2.42	22	25	5	1	100%	1
4Y28_CLA_A_1128	59%	8%	0.115	0.945	2.35	2.36	21	25	12	1	100%	1
4Y28_CLA_A_1103	59%	7%	0.122	0.953	2.34	2.49	22	26	5	1	100%	1
4Y28_CLA_B_1023	57%	7%	0.121	0.942	2.36	2.45	22	26	8	1	100%	1
4Y28_CLA_B_1206	56%	7%	0.125	0.945	2.37	2.45	21	26	5	1	100%	1
4Y28_CLA_F_1302	55%	5%	0.093	0.943	2.61	2.78	20	23	19	1	77%	1
4Y28_CLA_A_1107	55%	7%	0.126	0.944	2.38	2.47	23	25	2	1	100%	1
4Y28_CLA_A_1101	55%	7%	0.121	0.935	2.35	2.52	22	23	4	1	100%	1
4Y28_CLA_A_1104	54%	7%	0.126	0.939	2.37	2.49	23	25	4	1	100%	1
4Y28_CLA_B_1210	54%	7%	0.138	0.956	2.35	2.46	22	26	9	1	100%	1
4Y28_CLA_A_1109	53%	7%	0.125	0.931	2.37	2.45	21	25	7	1	100%	1
4Y28_CLA_B_1225	53%	7%	0.137	0.951	2.38	2.4	21	23	4	1	100%	1
4Y28_CLA_A_1125	53%	6%	0.124	0.947	2.42	2.56	22	26	5	1	92%	1
4Y28_CLA_4_4009	52%	5%	0.111	0.959	2.5	2.77	19	24	14	1	77%	1
4Y28_CLA_A_1136	52%	5%	0.115	0.942	2.54	2.65	22	27	7	1	86%	1
4Y28_CLA_A_1106	52%	7%	0.133	0.938	2.37	2.49	22	24	15	1	100%	1
4Y28_CLA_B_1227	51%	7%	0.13	0.932	2.37	2.48	23	26	9	1	100%	1
4Y28_CLA_A_1119	51%	7%	0.136	0.942	2.36	2.42	22	24	7	1	100%	1
4Y28_CLA_B_1240	51%	7%	0.124	0.92	2.36	2.49	22	27	8	1	100%	1
4Y28_CLA_B_1202	51%	7%	0.143	0.951	2.35	2.53	22	25	9	1	100%	1
4Y28_CLA_A_1132	51%	7%	0.14	0.945	2.37	2.48	22	27	9	1	100%	1
4Y28_CLA_B_1223	50%	7%	0.135	0.936	2.34	2.5	22	27	5	0	100%	1
4Y28_CLA_4_4003	50%	7%	0.132	0.93	2.26	2.49	20	25	23	1	100%	1
4Y28_CLA_1_1012	50%	5%	0.107	0.942	2.56	2.75	20	26	17	1	77%	1
4Y28_CLA_B_1211	50%	7%	0.134	0.933	2.35	2.54	21	29	9	1	100%	1
4Y28_CLA_A_1102	50%	5%	0.109	0.945	2.66	2.7	22	23	4	1	77%	1
4Y28_CLA_B_1215	50%	6%	0.133	0.949	2.48	2.52	23	23	9	1	92%	1
4Y28_CLA_4_4005	50%	6%	0.128	0.938	2.3	2.7	19	30	14	1	92%	1
4Y28_CLA_B_1205	49%	7%	0.149	0.954	2.35	2.38	21	25	10	1	100%	1
4Y28_CLA_A_1111	49%	6%	0.13	0.939	2.45	2.53	22	26	8	1	92%	1
4Y28_CLA_B_1221	49%	7%	0.143	0.942	2.37	2.51	22	27	12	1	100%	1
4Y28_CLA_B_1231	49%	6%	0.119	0.918	2.49	2.49	22	25	4	1	92%	1
4Y28_CLA_1_1004	49%	7%	0.137	0.93	2.24	2.55	19	24	31	1	100%	1
4Y28_CLA_B_1216	48%	7%	0.14	0.934	2.37	2.43	23	25	5	1	100%	1
4Y28_CLA_B_1239	48%	7%	0.139	0.932	2.37	2.45	23	25	6	1	100%	1
4Y28_CLA_B_1226	48%	7%	0.142	0.936	2.34	2.39	21	24	9	1	100%	1
4Y28_CLA_4_4012	48%	7%	0.142	0.935	2.22	2.54	19	30	26	1	100%	1
4Y28_CLA_A_1129	47%	4%	0.11	0.932	2.68	2.76	22	25	0	1	77%	1
4Y28_CLA_A_1237	47%	6%	0.136	0.939	2.45	2.65	21	25	5	1	92%	1
4Y28_CLA_2_2003	47%	5%	0.12	0.93	2.38	2.84	19	24	34	1	85%	1
4Y28_CLA_A_1122	47%	7%	0.147	0.939	2.37	2.42	22	24	11	1	100%	1
4Y28_CLA_A_1139	46%	7%	0.137	0.919	2.37	2.45	23	26	5	1	100%	1
4Y28_CLA_L_1502	46%	6%	0.134	0.931	2.36	2.64	19	27	14	1	92%	1
4Y28_CLA_2_2004	46%	7%	0.14	0.923	2.39	2.47	18	27	31	1	100%	1
4Y28_CLA_B_1224	46%	7%	0.15	0.937	2.35	2.49	21	26	8	1	100%	1
4Y28_CLA_B_1207	45%	7%	0.144	0.926	2.36	2.48	22	25	15	0	100%	1
4Y28_CLA_A_1127	45%	7%	0.152	0.938	2.37	2.4	22	23	6	1	100%	1
4Y28_CLA_2_2009	45%	5%	0.115	0.929	2.58	2.78	20	24	20	1	77%	1
4Y28_CLA_4_4004	45%	6%	0.14	0.935	2.34	2.61	18	27	20	1	92%	1
4Y28_CLA_B_1204	44%	5%	0.121	0.918	2.58	2.63	22	24	11	1	85%	1
4Y28_CLA_A_1117	44%	7%	0.162	0.951	2.37	2.42	22	24	5	1	100%	1
4Y28_CLA_A_1022	44%	7%	0.144	0.92	2.39	2.41	20	27	5	1	100%	1
4Y28_CLA_2_2008	44%	4%	0.129	0.948	2.48	3.11	19	32	20	1	77%	1
4Y28_CLA_1_1003	44%	5%	0.137	0.943	2.42	2.72	21	28	36	1	85%	1
4Y28_CLA_B_1012	44%	7%	0.149	0.926	2.36	2.42	22	25	5	1	100%	1
4Y28_CLA_A_1116	43%	6%	0.145	0.936	2.46	2.62	21	24	9	1	92%	1
4Y28_CLA_A_1130	43%	4%	0.129	0.945	2.69	2.74	23	24	2	0	77%	1
4Y28_CLA_A_1137	43%	5%	0.134	0.935	2.56	2.6	23	25	4	1	85%	1
4Y28_CLA_B_1236	43%	5%	0.136	0.937	2.56	2.69	21	24	6	1	85%	1
4Y28_CLA_2_2005	43%	6%	0.129	0.924	2.49	2.6	20	25	30	1	85%	1
4Y28_CLA_B_1021	43%	7%	0.15	0.923	2.35	2.51	21	25	9	1	100%	1
4Y28_CLA_B_1222	42%	7%	0.154	0.929	2.34	2.53	22	27	11	1	100%	1
4Y28_CLA_A_1126	42%	7%	0.155	0.929	2.38	2.49	22	27	10	1	100%	1
4Y28_CLA_2_2007	42%	6%	0.147	0.933	2.37	2.55	21	25	30	1	92%	1
4Y28_CLA_B_1234	42%	6%	0.148	0.934	2.47	2.6	22	26	7	1	92%	1
4Y28_CLA_A_1112	42%	7%	0.152	0.922	2.36	2.47	22	25	15	1	100%	1
4Y28_CLA_2_2012	41%	5%	0.134	0.926	2.41	2.73	19	27	25	1	85%	1
4Y28_CLA_B_1220	41%	7%	0.151	0.918	2.37	2.39	22	25	12	0	100%	1
4Y28_CLA_3_3003	41%	6%	0.143	0.922	2.36	2.62	20	27	69	1	92%	1
4Y28_CLA_A_1133	41%	5%	0.137	0.929	2.56	2.64	21	24	3	0	85%	1
4Y28_CLA_A_1123	41%	7%	0.163	0.935	2.37	2.48	22	25	7	1	100%	1
4Y28_CLA_A_1105	41%	4%	0.122	0.916	2.68	2.74	21	28	6	1	78%	1
4Y28_CLA_A_1120	40%	6%	0.139	0.912	2.45	2.58	22	23	4	1	92%	1
4Y28_CLA_B_1208	40%	5%	0.126	0.908	2.58	2.67	22	24	9	1	85%	1
4Y28_CLA_3_3001	40%	4%	0.112	0.902	2.56	2.85	20	24	22	1	77%	1
4Y28_CLA_3_3005	40%	5%	0.144	0.936	2.47	2.75	19	28	18	1	85%	1
4Y28_CLA_2_2002	40%	4%	0.117	0.923	2.66	2.85	19	25	49	1	71%	1
4Y28_CLA_A_1131	40%	7%	0.163	0.931	2.37	2.44	22	24	1	1	100%	1
4Y28_CLA_1_1005	40%	5%	0.128	0.908	2.41	2.74	19	28	23	1	85%	1
4Y28_CLA_B_1232	40%	5%	0.121	0.896	2.57	2.61	23	23	4	1	85%	1
4Y28_CLA_B_1238	40%	7%	0.15	0.908	2.38	2.44	23	23	7	1	100%	1
4Y28_CLA_2_2001	40%	6%	0.156	0.936	2.31	2.68	20	29	44	1	92%	1
4Y28_CLA_A_1124	39%	5%	0.136	0.92	2.57	2.72	22	25	4	1	85%	1
4Y28_CLA_4_4017	39%	7%	0.157	0.918	2.24	2.5	19	28	12	1	100%	1
4Y28_CLA_3_3012	39%	4%	0.126	0.92	2.52	2.94	19	27	36	1	77%	1
4Y28_CLA_A_1135	39%	4%	0.136	0.931	2.65	2.77	22	24	3	1	78%	1
4Y28_CLA_A_1108	38%	4%	0.123	0.924	2.86	2.71	22	22	2	1	71%	1
4Y28_CLA_A_1121	38%	5%	0.13	0.903	2.56	2.71	22	26	5	1	85%	1
4Y28_CLA_1_1007	38%	4%	0.124	0.925	2.66	3	19	25	7	1	71%	1
4Y28_CLA_A_1110	38%	5%	0.154	0.943	2.58	2.58	21	24	13	1	85%	1
4Y28_CLA_F_1301	38%	5%	0.119	0.919	2.63	2.76	19	21	8	1	69%	1
4Y28_CLA_A_1118	38%	4%	0.129	0.932	2.82	2.77	21	22	3	1	71%	1
4Y28_CLA_3_3004	38%	6%	0.154	0.923	2.35	2.56	19	25	21	1	92%	1
4Y28_CLA_B_1214	37%	6%	0.157	0.93	2.48	2.62	22	25	6	1	91%	1
4Y28_CLA_G_1002	37%	4%	0.107	0.891	2.74	2.82	21	24	25	1	71%	1
4Y28_CLA_L_1503	37%	5%	0.122	0.901	2.57	2.78	19	24	11	1	77%	1
4Y28_CLA_B_1209	37%	4%	0.128	0.925	2.86	2.71	22	20	4	1	71%	1
4Y28_CLA_B_1213	36%	6%	0.146	0.901	2.45	2.53	21	23	8	0	92%	1
4Y28_CLA_B_1228	34%	6%	0.155	0.909	2.46	2.52	22	23	3	1	92%	1
4Y28_CLA_B_1212	33%	5%	0.157	0.925	2.54	2.68	21	26	5	1	85%	1
4Y28_CLA_B_1201	33%	5%	0.138	0.911	2.67	2.71	23	26	2	1	77%	1
4Y28_CLA_B_1219	33%	6%	0.16	0.909	2.47	2.47	23	23	2	1	92%	1
4Y28_CLA_1_1014	32%	4%	0.118	0.884	2.7	2.9	19	25	15	1	71%	1
4Y28_CLA_4_4002	32%	5%	0.147	0.918	2.55	2.79	18	27	17	1	77%	1
4Y28_CLA_4_4007	32%	6%	0.168	0.916	2.28	2.73	19	25	33	1	92%	1
4Y28_CLA_3_3017	30%	4%	0.141	0.914	2.74	2.7	18	23	17	1	71%	1
4Y28_CLA_G_1001	30%	5%	0.136	0.871	2.44	2.76	19	29	43	1	85%	1
4Y28_CLA_B_1218	29%	7%	0.169	0.884	2.37	2.51	21	24	13	1	100%	1
4Y28_CLA_B_1217	29%	4%	0.143	0.908	2.84	2.71	22	23	1	1	71%	1
4Y28_CLA_4_4001	28%	6%	0.171	0.901	2.32	2.65	19	28	29	1	92%	1
4Y28_CLA_3_3006	28%	4%	0.117	0.845	2.56	2.86	20	25	45	1	77%	1
4Y28_CLA_1_1002	27%	4%	0.146	0.907	2.64	2.9	19	24	22	1	71%	1
4Y28_CLA_A_1114	26%	4%	0.121	0.856	2.85	2.71	21	23	2	1	71%	1
4Y28_CLA_A_1151	25%	4%	0.127	0.846	2.72	2.73	23	22	3	1	77%	1
4Y28_CLA_4_4008	24%	3%	0.142	0.88	2.61	3.14	20	28	22	1	71%	1
4Y28_CLA_1_1006	24%	5%	0.14	0.862	2.59	2.82	21	26	7	1	77%	1
4Y28_CLA_2_2006	23%	5%	0.154	0.864	2.49	2.66	20	25	27	1	85%	1
4Y28_CLA_A_1134	22%	5%	0.16	0.864	2.57	2.64	21	24	3	1	85%	1
4Y28_CLA_1_1011	21%	5%	0.166	0.888	2.54	2.82	20	27	19	1	77%	1
4Y28_CLA_A_1115	20%	4%	0.155	0.874	2.85	2.68	22	21	1	1	71%	1
4Y28_CLA_3_3002	19%	4%	0.153	0.868	2.7	2.89	21	26	14	1	71%	1
4Y28_CLA_L_1501	19%	5%	0.153	0.849	2.59	2.79	18	28	17	1	77%	1
4Y28_CLA_1_1001	18%	6%	0.167	0.831	2.32	2.64	19	24	52	1	92%	1
4Y28_CLA_4_4006	18%	5%	0.162	0.857	2.5	2.68	19	24	21	1	77%	1
4Y28_CLA_G_1003	17%	6%	0.159	0.811	2.37	2.62	20	27	39	1	92%	1
4Y28_CLA_A_1113	16%	4%	0.156	0.851	2.84	2.72	22	23	3	1	71%	1
4Y28_CLA_H_1000	15%	4%	0.145	0.818	2.84	2.72	21	22	5	1	71%	1
4Y28_CLA_1_1008	14%	4%	0.171	0.86	2.67	2.83	19	25	42	1	71%	1
4Y28_CLA_3_3013	11%	5%	0.157	0.8	2.77	2.55	19	22	26	1	71%	1
4Y28_CLA_3_3018	10%	4%	0.158	0.783	2.56	2.9	21	27	25	1	77%	1
4Y28_CLA_K_1001	9%	4%	0.157	0.784	2.73	2.99	20	23	18	1	71%	1
4Y28_CLA_1_1013	9%	4%	0.169	0.804	2.75	2.85	21	21	14	1	71%	1
4Y28_CLA_3_3007	8%	5%	0.178	0.789	2.57	2.78	20	26	5	1	77%	1
4Y28_CLA_2_2016	5%	3%	0.19	0.755	2.62	3.36	19	30	54	1	77%	1
4Y28_CLA_3_3008	4%	3%	0.167	0.688	2.51	3.25	19	27	27	1	74%	1
4Y28_CLA_4_4016	3%	4%	0.177	0.682	2.74	2.8	20	24	32	1	71%	1
4Y28_CLA_2_2019	2%	2%	0.168	0.707	3.31	3.03	16	16	0	1	42%	0.99
4Y28_CLA_3_3010	2%	6%	0.263	0.725	2.34	2.61	19	24	47	1	92%	1
4Y28_CLA_J_1302	2%	4%	0.204	0.655	2.7	2.8	22	25	7	1	77%	1
4Y28_CLA_3_3019	0%	2%	0.273	0.446	3.45	3.01	16	15	1	1	42%	0.99
7DKZ_CLA_B_828	82%	32%	0.071	0.971	1.23	1.44	8	13	2	1	100%	1
2O01_CLA_B_1209	81%	5%	0.056	0.981	2.35	2.8	16	26	50	2	85%	1
4XK8_CLA_b_803	79%	9%	0.072	0.963	2.05	2.47	20	30	8	1	100%	1
5L8R_CLA_A_839	78%	26%	0.078	0.969	1.35	1.64	6	12	7	1	100%	1
6ZXS_CLA_B_807	69%	23%	0.1	0.963	1.35	1.83	7	16	6	1	100%	1
7M76_CLA_B_3041	100%	33%	0.015	0.999	1.25	1.37	7	8	4	1	100%	1
8OW6_CLA_B_601	100%	41%	0.016	0.998	1.2	1.02	12	4	0	1	100%	1
6PGK_CLA_G_842	100%	9%	0.024	0.997	2.21	2.22	21	25	9	1	100%	1
1VF5_CLA_B_201	97%	14%	0.039	0.993	1.61	2.22	9	17	9	3	100%	1
5V2C_CLA_d_403	97%	15%	0.034	0.984	1.7	2.01	14	23	4	1	100%	1

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

4Y28 | pdb_00004y28

CLA: CHLOROPHYLL A

CLA is a Ligand Of Interest in 4Y28 designated by the RCSB