U5P: URIDINE-5'-MONOPHOSPHATE
U5P is a Ligand Of Interest in 4X9D designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
4X9D_U5P_A_104 | 28% | 67% | 0.189 | 0.839 | 0.6 | 0.66 | - | 1 | 1 | 0 | 100% | 0.6424 |
4X9D_U5P_D_101 | 8% | 70% | 0.271 | 0.74 | 0.59 | 0.55 | - | - | 1 | 0 | 100% | 0.6852 |
4X9D_U5P_B_104 | 8% | 69% | 0.305 | 0.774 | 0.55 | 0.66 | - | 1 | 2 | 0 | 100% | 0.9048 |
4X9D_U5P_E_104 | 5% | 46% | 0.365 | 0.769 | 0.88 | 1.18 | 2 | 3 | 10 | 0 | 100% | 0.5 |
4X9D_U5P_F_104 | 3% | 67% | 0.275 | 0.597 | 0.64 | 0.64 | - | - | 5 | 0 | 100% | 0.7 |
4X9D_U5P_C_104 | 0% | 69% | 0.48 | 0.383 | 0.56 | 0.63 | - | 1 | 1 | 0 | 100% | 0.5 |
6YWU_U5P_A_501 | 100% | 40% | 0.036 | 0.994 | 1.2 | 1.13 | 2 | 1 | 0 | 0 | 100% | 1 |
2E6Y_U5P_B_302 | 100% | 49% | 0.04 | 0.993 | 1.11 | 0.85 | 1 | 1 | 1 | 0 | 100% | 1 |
6ZWY_U5P_A_501 | 100% | 44% | 0.048 | 0.994 | 0.99 | 1.17 | 1 | 1 | 0 | 0 | 100% | 1 |
3EWY_U5P_A_481 | 99% | 22% | 0.05 | 0.986 | 1.81 | 1.47 | 4 | 2 | 0 | 0 | 100% | 1 |
2V30_U5P_A_1480 | 99% | 33% | 0.06 | 0.987 | 1.12 | 1.52 | 3 | 7 | 1 | 0 | 100% | 1 |