DGD: DIGALACTOSYL DIACYL GLYCEROL (DGDG)
DGD is a Ligand Of Interest in 4UB6 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
4UB6_DGD_C_517 | 70% | 51% | 0.12 | 0.947 | 0.86 | 1.04 | 3 | 4 | 0 | 0 | 94% | 0.9394 |
4UB6_DGD_h_102 | 52% | 51% | 0.137 | 0.904 | 0.92 | 0.98 | 3 | 6 | 0 | 0 | 94% | 0.9394 |
4UB6_DGD_c_916 | 45% | 50% | 0.172 | 0.916 | 0.83 | 1.11 | 2 | 6 | 0 | 0 | 94% | 0.9394 |
4UB6_DGD_H_102 | 45% | 52% | 0.161 | 0.904 | 0.94 | 0.93 | 3 | 4 | 0 | 0 | 94% | 0.9394 |
4UB6_DGD_C_519 | 41% | 54% | 0.205 | 0.934 | 0.84 | 0.95 | 3 | 5 | 0 | 0 | 94% | 0.9394 |
4UB6_DGD_c_917 | 41% | 51% | 0.182 | 0.91 | 0.88 | 1 | 2 | 2 | 0 | 0 | 94% | 0.9394 |
4UB6_DGD_C_518 | 40% | 52% | 0.197 | 0.92 | 0.85 | 1.02 | 2 | 6 | 0 | 0 | 94% | 0.9394 |
4UB6_DGD_c_918 | 37% | 53% | 0.204 | 0.913 | 0.86 | 0.95 | 2 | 4 | 0 | 0 | 94% | 0.9394 |
4UB6_DGD_d_406 | 1% | 44% | 0.45 | 0.607 | 0.93 | 1.22 | 3 | 6 | 0 | 0 | 94% | 0.9394 |
4UB6_DGD_D_405 | 1% | 43% | 0.397 | 0.546 | 0.98 | 1.24 | 3 | 7 | 0 | 0 | 94% | 0.9394 |
5V2C_DGD_C_516 | 95% | 43% | 0.067 | 0.983 | 0.89 | 1.29 | 5 | 10 | 0 | 0 | 94% | 0.9394 |
7YQ7_DGD_C_518 | 87% | 51% | 0.084 | 0.967 | 0.83 | 1.07 | 3 | 5 | 0 | 0 | 94% | 0.9394 |
8IR5_DGD_C_515 | 86% | 47% | 0.092 | 0.97 | 0.81 | 1.21 | 2 | 8 | 0 | 0 | 94% | 0.9394 |
8IRC_DGD_C_517 | 85% | 47% | 0.096 | 0.973 | 0.83 | 1.2 | 2 | 8 | 0 | 0 | 94% | 0.9394 |
5ZZN_DGD_c_517 | 85% | 45% | 0.09 | 0.966 | 1.05 | 1.06 | 3 | 5 | 0 | 0 | 94% | 0.9394 |
7RF1_DGD_c_519 | 85% | 34% | 0.093 | 0.968 | 1.16 | 1.45 | 6 | 11 | 0 | 0 | 94% | 0.9394 |